PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028077523.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41972.9 Da    PI: 6.319
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028077523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.9e-171151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n   r+vt+ kR++ + KKA EL +LCd++v++ii++++
  XP_028077523.1 11 IRNAKARYVTYQKRKKALKKKACELETLCDVQVCLIIYGPE 51
                    8999***********************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MGRAKQRMEL IRNAKARYVT YQKRKKALKK KACELETLCD VQVCLIIYGP ELDDYSTKVE  60
IWPQNPNDIQ RLIDSYRNQS IEDRHRRTLD LSNFFENRNQ KIKDALVKLR KKNDKALYST  120
WDDCYNDLPE GQLRAFEGML EGKLADVKAR VEFMKRTQAL ASLNDVEQTT QQNYSNYYMQ  180
GLFGTTSLQM GIIHEDTPTS LLNPLYEIDD VSLHYPFDQT DHQGIVELDE KSMVISPMMM  240
PMNNINDTHY TQLGGMSSSN LQFIDPLKTS IYNDPIMLLP SLEPVLTGVS CTESSFSMSR  300
MMENEVGKNH HPSPSMGYCG GPSMQTMMPY MQYLKMASGP SQVHAWQMEE YYKANEFQMK  360
NQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-13M-type_MADS family protein