PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077457.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 565aa MW: 62526.4 Da PI: 6.1191

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C+ Gd C +aHg XP_028077457.1 266 PCPDFRK-GACRLGDMCEYAHG 286 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MNNLTVETED TFASLLDFAA NNDIEGFERY IECDLSGIDE VGLWYGRQKG SKQMVLEHRT 60 PLMVAATYGS VDVVKLILSL SDVVVDVNQP HGLDRNTALH CAASGGSMNA VDVMKLLLEA 120 GADPNMINGN GHYPIDVIVV SPKFQDLKFS LEKFLTTNDS VSTATSNSNS PPQSPSLSSS 180 SNSNSSPNSS KFINVTLSEK KEYPIDPSMP DIKNTIYSTD EFRMFSFKVR PCSRAYSHDW 240 TDCPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRLGDM CEYAHGVFES WLHPAQYRTR 300 LCKDGTSCNR RVCFFAQTQQ ELRPLHVSTG SAIMSPSPFT PPLSPSTNGI SNMGWPHPNV 360 PALNLPGSNN HQSSSRLRSS LNARDFASED LDLLPDFDVQ QQQLLQNELC RFSQLGISNN 420 SLNCSAESSS PRFSDQALAS SVFSPTHKSA IFNQFQHQTI SPMSPRVSLL AQHEKQKQQF 480 RSRSFRDLGS NSASDSWSKW GSSNGKPDWS VNPDEFGRLR RSSSFELGNN GDEPDLSWVQ 540 SLVKESPQEV ADAAGFLSEG SNLNS

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MNNLTVETED TFASLLDFAA NNDIEGFERY IECDLSGIDE VGLWYGRQKG SKQMVLEHRT  60
PLMVAATYGS VDVVKLILSL SDVVVDVNQP HGLDRNTALH CAASGGSMNA VDVMKLLLEA  120
GADPNMINGN GHYPIDVIVV SPKFQDLKFS LEKFLTTNDS VSTATSNSNS PPQSPSLSSS  180
SNSNSSPNSS KFINVTLSEK KEYPIDPSMP DIKNTIYSTD EFRMFSFKVR PCSRAYSHDW  240
TDCPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRLGDM CEYAHGVFES WLHPAQYRTR  300
LCKDGTSCNR RVCFFAQTQQ ELRPLHVSTG SAIMSPSPFT PPLSPSTNGI SNMGWPHPNV  360
PALNLPGSNN HQSSSRLRSS LNARDFASED LDLLPDFDVQ QQQLLQNELC RFSQLGISNN  420
SLNCSAESSS PRFSDQALAS SVFSPTHKSA IFNQFQHQTI SPMSPRVSLL AQHEKQKQQF  480
RSRSFRDLGS NSASDSWSKW GSSNGKPDWS VNPDEFGRLR RSSSFELGNN GDEPDLSWVQ  540
SLVKESPQEV ADAAGFLSEG SNLNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein