PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077009.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRAS

Protein Properties

Length: 394aa MW: 45223.3 Da PI: 4.3421

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	77	3.5e-24	135	262	3	142
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +l+ + ea+++g+ el + +++r+se +sp g m +l y+ + ++ +++s ++ aa+ +f++++P+ kf+h++ XP_028077009.1 135 HLIKAYREAIDEGQIELSEVIMKRISEKVSPVGGVMDQLLYYLFQPVDKQADY----------LRQES---DKNFRAAFMTFYQIFPYGKFAHFA 216 666677799*******************************99988887776..........33333...4556678889********** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppsl 142 aN+aIl+a+ ++ e +H+iDfd+++G+QWp++++a+ ++++ +l XP_028077009.1 217 ANRAILQAMPHDvELIHVIDFDMGEGIQWPSMIEAIGWQQRKEIRL 262 *****9998999*****************98766555555 PP
2	GRAS	22.7	1.1e-07	281	393	258	374
GRAS 258 lealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 l +y al++s+e +p++ e+r+ +E ++++ i+++ + e +++ + +G++ ++s++ ++a ++++ k g r XP_028077009.1 281 DGHLVHYQALLESIEWAFPNHLgEARTALECLFVAPLISSLAWIHKWE------EMGC-CDLQLGFGLEGCQVSKESLMEAMEMVSEGKsLYGVR 368 456889*********9999878888889888888888877666666......2222.334456999********999999999899999 PP GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374 +e e+++s+ l W++ pLv +S+Wr XP_028077009.1 369 IEgENNNSMALEWRGIPLVRFSCWR 393 9988899999************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MNTKTQPKFL QSPWPFFNYV NSPFLFNEFG DFGLAMDVDM DDDNFDFCPP FITTEDYSFD 60 NSKISTFPIP TTLLDKFSDP QVHVKDSDIA LPEDGFSISV EDFDIEVLSN SLKQSEESLQ 120 LTLPTENMEL NNAIHLIKAY REAIDEGQIE LSEVIMKRIS EKVSPVGGVM DQLLYYLFQP 180 VDKQADYLRQ ESDKNFRAAF MTFYQIFPYG KFAHFAANRA ILQAMPHDVE LIHVIDFDMG 240 EGIQWPSMIE AIGWQQRKEI RLRPHVWVNS RFSSSFGSFL DGHLVHYQAL LESIEWAFPN 300 HLGEARTALE CLFVAPLISS LAWIHKWEEM GCCDLQLGFG LEGCQVSKES LMEAMEMVSE 360 GKSLYGVRIE GENNNSMALE WRGIPLVRFS CWRS

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MNTKTQPKFL QSPWPFFNYV NSPFLFNEFG DFGLAMDVDM DDDNFDFCPP FITTEDYSFD  60
NSKISTFPIP TTLLDKFSDP QVHVKDSDIA LPEDGFSISV EDFDIEVLSN SLKQSEESLQ  120
LTLPTENMEL NNAIHLIKAY REAIDEGQIE LSEVIMKRIS EKVSPVGGVM DQLLYYLFQP  180
VDKQADYLRQ ESDKNFRAAF MTFYQIFPYG KFAHFAANRA ILQAMPHDVE LIHVIDFDMG  240
EGIQWPSMIE AIGWQQRKEI RLRPHVWVNS RFSSSFGSFL DGHLVHYQAL LESIEWAFPN  300
HLGEARTALE CLFVAPLISS LAWIHKWEEM GCCDLQLGFG LEGCQVSKES LMEAMEMVSE  360
GKSLYGVRIE GENNNSMALE WRGIPLVRFS CWRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	3e-16	GRAS family protein