PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028076942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 297aa MW: 34437.2 Da PI: 7.6881 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.5 | 1.3e-16 | 4 | 44 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+v f kR++g+ KK +EL +LCd++v++ii++++ XP_028076942.1 4 IRNDKTRYVAFQKRKKGLKKKTYELKTLCDVKVCLIIYGPK 44 89*************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence |
MELIRNDKTR YVAFQKRKKG LKKKTYELKT LCDVKVCLII YGPKINDRPT DDQAEIWPPN 60 LDVIQHLIDT YKNQSSEDRT RRTLGLSDFF EDRNQKIEDT FVKLRKKNDE ARYSTWDVRY 120 NGLSKEQLKE FESVLEGKLQ DVKARVAFMK GIDQKLPVAC INDNSHTQTT QNQSYFMHGC 180 MFGTEVDNGI ANLQYSFNQA QVDANSKENP MMMMTMMPMN NNQYYNQLGG VSNSNFICNP 240 LDRLIYYDPM MLENVIVNNP SQPVSYCNPS IQTMSPYMQC LKMECASSSV HPSQLDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-11 | M-type_MADS family protein |