PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076387.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 650aa MW: 74715.8 Da PI: 6.797

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.8e-08	462	503	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W eE e l ++v+++++g +W+ I++++g+gR+ +++ XP_028076387.1 462 KPWGREEIEMLRKGVQKYPKGtsrRWDVISEYIGTGRSVEDI 503 68************************************9886 PP
2	Myb_DNA-binding	24.5	6.2e-08	593	637	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a+ ++ g+ +qck ++ XP_028076387.1 593 VWSAVQERALVQALKTFPKEtsqRWERVAAAIP-GKNVNQCKKKFA 637 6******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MYENIYVEDD NCCASWIVRT NDLKNITCGI DEAILIIVYE RTCYFNENYG NVNGEEDADG 60 GEQNVSNDKE QEYVPMPSSE SYSTQGKKKS GAEGKQQDHY ALLGLSHLRY LATEEQIRKS 120 YRETALKHHP DKQAALLLAE ETETAKQAKK DEIENHFKAI QEAYEMLIDP ARRRIYDSTD 180 EFDDEIPTDC APRDFFKVFG PVFMRNGRWS VNQPIPSLGD ESTALKEVDS FYNFWYSFKS 240 WREFPNEDEF DLEQAESRDH KRWMERQNAK LTEKARKEDY ARIRALVDNA YKRDPRIQKR 300 REEEKAEKQR KKEAKYLAKK LQEEEAIRIA EEQRCQKEEE ERRAAEAALH QKKTREKEKK 360 LLRKERTRFR TLSGPVLSQH LLDVTKDDVE SLCLSLEIEQ LRNLCEKIEA KEGLEKAKLL 420 KEALGCNHNL KEDQKQDKTP KENGSVAVNG SVILSGSEKK EKPWGREEIE MLRKGVQKYP 480 KGTSRRWDVI SEYIGTGRSV EDILKATKTV LLQKPDNAKA FDSFLEKRKP AQSIAAPLTT 540 RKETEGVSTS NGLDGNDAKT ANAKESSSQG SNPKKLDDVI GDDGASLSSD QDVWSAVQER 600 ALVQALKTFP KETSQRWERV AAAIPGKNVN QCKKKFALLK ENFRNKKNVV

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MYENIYVEDD NCCASWIVRT NDLKNITCGI DEAILIIVYE RTCYFNENYG NVNGEEDADG  60
GEQNVSNDKE QEYVPMPSSE SYSTQGKKKS GAEGKQQDHY ALLGLSHLRY LATEEQIRKS  120
YRETALKHHP DKQAALLLAE ETETAKQAKK DEIENHFKAI QEAYEMLIDP ARRRIYDSTD  180
EFDDEIPTDC APRDFFKVFG PVFMRNGRWS VNQPIPSLGD ESTALKEVDS FYNFWYSFKS  240
WREFPNEDEF DLEQAESRDH KRWMERQNAK LTEKARKEDY ARIRALVDNA YKRDPRIQKR  300
REEEKAEKQR KKEAKYLAKK LQEEEAIRIA EEQRCQKEEE ERRAAEAALH QKKTREKEKK  360
LLRKERTRFR TLSGPVLSQH LLDVTKDDVE SLCLSLEIEQ LRNLCEKIEA KEGLEKAKLL  420
KEALGCNHNL KEDQKQDKTP KENGSVAVNG SVILSGSEKK EKPWGREEIE MLRKGVQKYP  480
KGTSRRWDVI SEYIGTGRSV EDILKATKTV LLQKPDNAKA FDSFLEKRKP AQSIAAPLTT  540
RKETEGVSTS NGLDGNDAKT ANAKESSSQG SNPKKLDDVI GDDGASLSSD QDVWSAVQER  600
ALVQALKTFP KETSQRWERV AAAIPGKNVN QCKKKFALLK ENFRNKKNVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein