PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076239.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 508aa MW: 53236.1 Da PI: 8.2125

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_028076239.1 69 FICEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	14.6	9.5e-05	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H++++ XP_028076239.1 145 WKCEKCSKKYAVQSDWKAHLKVC 167 58******************987 PP
3	zf-C2H2	11.2	0.0011	175	193	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + XP_028076239.1 175 DCGTPFSRRDSFITHRAFC 193 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MPVDLDNSSA MNDSTASGEA SVSSSGNQIV LPNPPPEKEK KKRNLPGMPD PNAEVIALSP 60 KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVRKRVY VCPEPSCVHH 120 DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHLKVCGTR EYKCDCGTPF 180 SRRDSFITHR AFCDALAEES AKAKTVVVAA ASTDEDPKLQ SVASSPPPPP ALPPSSTVMS 240 SVLPIQNPDT ELPENPNPTQ ILDDAPVTTG LTGSCSSTSS SSSNGSTSSG VFASLFASST 300 ASASLQPPTI GFTDLIRAMA RPEHAPDLTP SSFTEPISLC LATNHGSSIF GTAGQERRQY 360 APPPQPALSA TALLQKAAQM GAAATNASLL RGFGIVSSTS SSGQQQELDR RQIEPPESGS 420 LVAGLGLGLP CDGGSGLKEL MMGTPSVFGP KQATLDLLGL GMAAGGVPTS GLSALMTSIG 480 GGFDVAAAAA AASYGGGEFT GKDMGRSS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MPVDLDNSSA MNDSTASGEA SVSSSGNQIV LPNPPPEKEK KKRNLPGMPD PNAEVIALSP  60
KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVRKRVY VCPEPSCVHH  120
DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHLKVCGTR EYKCDCGTPF  180
SRRDSFITHR AFCDALAEES AKAKTVVVAA ASTDEDPKLQ SVASSPPPPP ALPPSSTVMS  240
SVLPIQNPDT ELPENPNPTQ ILDDAPVTTG LTGSCSSTSS SSSNGSTSSG VFASLFASST  300
ASASLQPPTI GFTDLIRAMA RPEHAPDLTP SSFTEPISLC LATNHGSSIF GTAGQERRQY  360
APPPQPALSA TALLQKAAQM GAAATNASLL RGFGIVSSTS SSGQQQELDR RQIEPPESGS  420
LVAGLGLGLP CDGGSGLKEL MMGTPSVFGP KQATLDLLGL GMAAGGVPTS GLSALMTSIG  480
GGFDVAAAAA AASYGGGEFT GKDMGRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	3e-94	C2H2 family protein