PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028075980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | Trihelix | ||||||||
Protein Properties | Length: 260aa MW: 31392.8 Da PI: 8.4398 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 73.7 | 3.2e-23 | 23 | 106 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ qe+++ + +r e++ ++ ++k++k lW+ ++ km e+g++rs +qCk+kw+nl +ryk +++++ + t++ +++p++++l+ XP_028075980.1 23 WSVQETRDFLMIRAELDPTFMETKRNKLLWDVIATKMNEKGYNRSTEQCKNKWKNLVTRYKGCQTMKLE-TQGMCQHFPFYNELQ 106 *****************************************************************9998.6888899******98 PP | |||||||
2 | Myb_DNA-binding | 22.1 | 3.6e-07 | 23 | 78 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 W+ +E ++ ++l + W+ Ia +m+ +R+ +qck++w ++ XP_028075980.1 23 WSVQETRDFLMIRAELDPTfmetkrnklLWDVIATKMNekgYNRSTEQCKNKWKNL 78 77777777777777777667777777888*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MEGYDGHYMS VNIDNTGDRF PHWSVQETRD FLMIRAELDP TFMETKRNKL LWDVIATKMN 60 EKGYNRSTEQ CKNKWKNLVT RYKGCQTMKL ETQGMCQHFP FYNELQAIFT ARMERMLWTQ 120 AEGRSNNNED DNEESDTVRE MISNSKKKKK RKVIKTGINQ GSASSSEKLK ILKELLEEFM 180 KQNMEMEMLW IKAYEAREDE RMVKEMEWRQ TMDALENERI MLDRRWRERQ EQRGMRDEVR 240 AERRDALVTV LLNKLRREDL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 152 | KKKKKRK |
2 | 147 | 152 | KKKKRK |
3 | 148 | 153 | KKKRKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 2e-45 | Trihelix family protein |