PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074785.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 862aa MW: 95213 Da PI: 4.7139

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	288	307	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C G++C+F H XP_028074785.1 288 ICDFFAK-GWCIKGNSCRFLH 307 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MPSAAAAAAA ATPDGHRPHH HHSPASGDQS HEGSDIGMDN DDDDVEYEEI EEEVEVEEEV 60 EEEVEVEEEI EEEEVEEEEE EVEEEEEMEE EVEEGEEIGE DLSDSPIDED QNDVSQGMES 120 KGHEEHLRSG SSDPEKSVVN LPADSLAVEG GIDNSKFSGA GETRQKGEST VNVEDPKSPN 180 MGIHQVASKD DGLLEFVGDK KDSGDFPKMI TPKDDDVCND GKASQRDSGI MTAETTKPFN 240 VSEIKQIGTQ SQEDINQGPT RLAVPQVRPR SLSPLAGYND GSKRPAVICD FFAKGWCIKG 300 NSCRFLHIKD DINNICQKPE GDVATLNEKS ELQADGGLRD GTERSESADF PNAAASSAAR 360 SSSFSLERTS SWEHGKSPRW HGVSEKHKIL SLQREDLSRG VSPDSLQSPV YKDKARSTSS 420 FKDVGRENLT HNWSSDDYPI SRNSCFPEQR SLANNSVISS DTYRSTVIPS HATSFEDMAA 480 RRSQFMLHDR SSPGLSRSPN LSLSPSIQTA GILPSQHIPA WTRSSFSFSS LGTDSLGAPK 540 HSDSDREYHA SRSSSWLQSS LRFSGSESEN LSVTNVSGGP LPISGHRTKI SSNDWEPSVR 600 FRSSFFIPQS PSSPGSLYDP IRDSIEQPNL GDGFSKLSST HEKSVTNTHL IMDGDPALTR 660 SLGPECGSYK HSISGHHEVH DNMLDKNFHG KNLFRTEGEA MRISHDEQKN KNTLPKEEKL 720 LTPAYAKDIT EANKINLESD LRLRKDGLRH KNELKVDNGR QSNEMDVDLK TDWEQKESKA 780 LKHFRAALID FVKELVKPAW REGHLSKDAH KVIVKKAVDK VLSTTQPHQA PNTAESIQQY 840 LDASQQKISK LVEGYVVKYG KS

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MPSAAAAAAA ATPDGHRPHH HHSPASGDQS HEGSDIGMDN DDDDVEYEEI EEEVEVEEEV  60
EEEVEVEEEI EEEEVEEEEE EVEEEEEMEE EVEEGEEIGE DLSDSPIDED QNDVSQGMES  120
KGHEEHLRSG SSDPEKSVVN LPADSLAVEG GIDNSKFSGA GETRQKGEST VNVEDPKSPN  180
MGIHQVASKD DGLLEFVGDK KDSGDFPKMI TPKDDDVCND GKASQRDSGI MTAETTKPFN  240
VSEIKQIGTQ SQEDINQGPT RLAVPQVRPR SLSPLAGYND GSKRPAVICD FFAKGWCIKG  300
NSCRFLHIKD DINNICQKPE GDVATLNEKS ELQADGGLRD GTERSESADF PNAAASSAAR  360
SSSFSLERTS SWEHGKSPRW HGVSEKHKIL SLQREDLSRG VSPDSLQSPV YKDKARSTSS  420
FKDVGRENLT HNWSSDDYPI SRNSCFPEQR SLANNSVISS DTYRSTVIPS HATSFEDMAA  480
RRSQFMLHDR SSPGLSRSPN LSLSPSIQTA GILPSQHIPA WTRSSFSFSS LGTDSLGAPK  540
HSDSDREYHA SRSSSWLQSS LRFSGSESEN LSVTNVSGGP LPISGHRTKI SSNDWEPSVR  600
FRSSFFIPQS PSSPGSLYDP IRDSIEQPNL GDGFSKLSST HEKSVTNTHL IMDGDPALTR  660
SLGPECGSYK HSISGHHEVH DNMLDKNFHG KNLFRTEGEA MRISHDEQKN KNTLPKEEKL  720
LTPAYAKDIT EANKINLESD LRLRKDGLRH KNELKVDNGR QSNEMDVDLK TDWEQKESKA  780
LKHFRAALID FVKELVKPAW REGHLSKDAH KVIVKKAVDK VLSTTQPHQA PNTAESIQQY  840
LDASQQKISK LVEGYVVKYG KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-40	C3H family protein