PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074575.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SRS

Protein Properties

Length: 417aa MW: 43984.4 Da PI: 8.8903

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.7	1.6e-60	202	366	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....kskkqsalsstklssae 95 a+C++CGnq+kkdC+h+RCRtCCksrgfdCathvkstW+pa +rrer + +aa+ +++++a k+ r ++++++++s+t+ s+++ XP_028074575.1 202 VATCEECGNQSKKDCSHKRCRTCCKSRGFDCATHVKSTWIPAVRRRERYHLTAATGGPCGSTSSAA--KKARLVaasqTTTTTTTTSHTSASNNT 294 579*******************************************887777655444443333..333333222245556666777788888 PP DUF702 96 skkeletss..........lPeevsseavfrcvrvssvdd...geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++tss lP +v+++avf+cvrv++v+d g++e+aYq +v+igGhvfkG+Lyd+G+ee XP_028074575.1 295 PPRSFDTSSshkgasfkegLPGKVRAPAVFKCVRVTAVEDgggGDNEYAYQGVVKIGGHVFKGFLYDHGVEE 366 8899999889**************************77779**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MVILIILREG IEEERKGGYC NIFFWFLCTF PFSKYSPSIK PTFFLHNKHK TQLTLGHLKI 60 GIVATTRRLP SDSGAFSDWL ASSSSSSRVG AEEYLSLGFN ATIPTAAAAG GGMWSTTTTR 120 QINYSQLPPE MGMVGLRDLF VVAPASSFHH HHEPTIISDP HGGAATALGV FPVLTASPYI 180 DQQPQHSNFL QSGGGIGGGS VVATCEECGN QSKKDCSHKR CRTCCKSRGF DCATHVKSTW 240 IPAVRRRERY HLTAATGGPC GSTSSAAKKA RLVAASQTTT TTTTTSHTSA SNNTPPRSFD 300 TSSSHKGASF KEGLPGKVRA PAVFKCVRVT AVEDGGGGDN EYAYQGVVKI GGHVFKGFLY 360 DHGVEERNGF PNMSQLNLGS GNSGGGGGGG PILNAMDAYS GSGGGLLGVS CYGNQIN

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MVILIILREG IEEERKGGYC NIFFWFLCTF PFSKYSPSIK PTFFLHNKHK TQLTLGHLKI  60
GIVATTRRLP SDSGAFSDWL ASSSSSSRVG AEEYLSLGFN ATIPTAAAAG GGMWSTTTTR  120
QINYSQLPPE MGMVGLRDLF VVAPASSFHH HHEPTIISDP HGGAATALGV FPVLTASPYI  180
DQQPQHSNFL QSGGGIGGGS VVATCEECGN QSKKDCSHKR CRTCCKSRGF DCATHVKSTW  240
IPAVRRRERY HLTAATGGPC GSTSSAAKKA RLVAASQTTT TTTTTSHTSA SNNTPPRSFD  300
TSSSHKGASF KEGLPGKVRA PAVFKCVRVT AVEDGGGGDN EYAYQGVVKI GGHVFKGFLY  360
DHGVEERNGF PNMSQLNLGS GNSGGGGGGG PILNAMDAYS GSGGGLLGVS CYGNQIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	1e-72	SRS family protein