PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074194.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 298aa MW: 33981.1 Da PI: 5.3402

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	59	111	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe ++++ e++ ++A++lgL+ rqV +WFqNrRa++k XP_028074194.1 59 KRRLSLNQVKALEKIFEVDNKVEPEQKVKIAEELGLEPRQVAIWFQNRRARWK 111 4578999*********************************************9 PP
2	HD-ZIP_I/II	124.6	4.7e-40	57	148	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krrls +qvk+LE+ Fe ++k+epe+Kv++a+eLgl+prqva+WFqnrRAR+ktkqlE+dy Lk++ydalk + ++Leke+e L +elk XP_028074194.1 57 ERKRRLSLNQVKALEKIFEVDNKVEPEQKVKIAEELGLEPRQVAIWFQNRRARWKTKQLERDYGLLKSNYDALKVDYHKLEKEKEGLIAELK 148 69*************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MKRFSIPETL GAMIYPTQEK KKNRKNNFAY STEFQAMLDG LDDEYEECTE ESSQSSERKR 60 RLSLNQVKAL EKIFEVDNKV EPEQKVKIAE ELGLEPRQVA IWFQNRRARW KTKQLERDYG 120 LLKSNYDALK VDYHKLEKEK EGLIAELKGL RAKLGEENTD SNHSVKEDAL FLEPDNSVLE 180 QSKASLTAIC GKPEQTNLGN NGNLLEIKGY LGIKHGLSDN NHSGVFNEDS NLNAQLLSSM 240 NSSLMNCFQF LDSRAVAEKG YSHQFVKMEE QSLFETEDSA NIFSVDQAPS HVNVKCKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	62	ERKRRL
2	58	87	RKRRLSLNQVKALEKIFEVDNKVEPEQKVK
3	106	114	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-41	HD-ZIP family protein