PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072803.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 291aa MW: 32242.7 Da PI: 4.8058

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.7	1.3e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ +fdfl +iv + XP_028072803.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLQRGAKTVNSLHLKQCVQSFSVFDFLREIVSK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLQRGAK 60 TVNSLHLKQC VQSFSVFDFL REIVSKVPDL GGSDAAGEDR SAAKRRKIAD DEEHDSDDEM 120 KRGRTHETGH TSSSGRGRGR GRGRGRGRGR TVERELPVHN EKFEDDPDIS QHNEKEKQND 180 ERLDNGAVPE CSKESIAVSK NAEATARNFD LNVGLDESED STTVLASTTP AVLAATTPAS 240 TSSTKPALEM KHEEYPGWSL ADMEKMAIDP VQLANLNGRI DEEEEDYDEE G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR
5	140	149	RGRGRGRGRG
6	140	150	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-65	NF-YC family protein