PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072758.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 298aa MW: 33060.6 Da PI: 4.8686

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072758.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54	3.7e-17	18	93	23	98
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ +fdfl +iv + XP_028072758.1 18 FARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLQRGAKTVNSLHLKQCVQSFSVFDFLREIVSK 93 69**********************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MRKKLDTRFP AVSHLSFFAR IKKIMQADED VGKIAMAVPL LVSKALELFL QDLCDRTYEI 60 TLQRGAKTVN SLHLKQCVQS FSVFDFLREI VSKVPDLGGS DAAGEDRSAA KRRKIADDEE 120 HDSDDEMKRG RTHETGHTSS SGRGRGRGRG RGRGRGRTVE RELPVHNEKF EDDPDISQHN 180 EKEKQNDERL DNGAVPECSK ESIAVSKNAE ATARNFDLNV GLDESEDSTT VLASTTPAVL 240 AATTPASTSS TKPALEMKHE EYPGWSLADM EKMAIDPVQL ANLNGRIDEE EEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	152	RGRGRGRGRG
2	143	153	RGRGRGRGRGR
3	145	154	RGRGRGRGRG
4	145	155	RGRGRGRGRGR
5	147	156	RGRGRGRGRG
6	147	157	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-62	NF-YC family protein