PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028072744.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 588aa    MW: 64875.8 Da    PI: 4.8026
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028072744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.32.8e-1102215872373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++Ll+c + ++++d e+a + L+r++e +s++gdp++R+ +yfteAL +r+++   +  k+ +  et+   s+e + ++k++++++P+ kf+hl
  XP_028072744.1 221 LKALLDCSR-FAESDPEKAVKSLNRVRESVSEHGDPIERVGFYFTEALFSRVSH---QAEKTPTIFETT---SEEYTLSYKALNDACPYSKFAHL 308
                     578999999.566799*************************************9...555555666665...889999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e+++++Hi+Df++ qG+QW a+lqaLa+R++g+p ++Ri g+ +p+ g   + +l++tg+rL++fA+ lg++fef++ v + ++d
  XP_028072744.1 309 TANQAILEATERAKKIHIVDFGVVQGVQWSAFLQALATRTAGKPdMVRISGIPAPALGksPAAALHATGNRLRDFAKLLGLNFEFEP-VLTPIQD 402
                     ****************************************776669********999998999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+p+E+laVn++lql++llde+ ++ +   + L+l ksl+P +v++ e ea++n++ Fl rf +al yysa+f+sle +l+r+s er 
  XP_028072744.1 403 LDGSSFRVEPDEVLAVNFMLQLYNLLDETDDVVE---TALRLAKSLNPSIVTLGEYEASLNRAGFLPRFKNALVYYSAIFESLEPNLSRDSPERL 494
                     **************************99999999...********************************************************** PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                      vEr l+gr+i  v+   +   rrer+e +e+Wr  +++aGF++v+ls +a +qa+ ll k++ s  +++ +++  ++ l W++ pL++vS+W
  XP_028072744.1 495 QVERLLFGRRIAGVIGPDEPGtRRERMEDKEQWRILMDSAGFESVALSRYARSQAEILLWKYDySTLFSLIQSEPGFLsLAWNKVPLLTVSSW 587
                     ***************9876655*****************************************9999998877766666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    
MAYMCADSGN LMAIAQQVIK QKQQQEQEQH HHQQQQQLVG VPPFCLSPWT TTNQTLSTSP  60
TMGYAFADPF PVDAPDHGGE PGFQFPNLEH HPAAFRFADF GGGSGGEFDS DEWMESLIGA  120
GDSTDSSNAW QSNAADFSIY ASDPFVACPS RLSVASSPPS DLNRVIFSNT QKNASLQPQS  180
SLPWVPSSPV PQSETNPLPK NNDAVAGASK SPEHDSSKPL LKALLDCSRF AESDPEKAVK  240
SLNRVRESVS EHGDPIERVG FYFTEALFSR VSHQAEKTPT IFETTSEEYT LSYKALNDAC  300
PYSKFAHLTA NQAILEATER AKKIHIVDFG VVQGVQWSAF LQALATRTAG KPDMVRISGI  360
PAPALGKSPA AALHATGNRL RDFAKLLGLN FEFEPVLTPI QDLDGSSFRV EPDEVLAVNF  420
MLQLYNLLDE TDDVVETALR LAKSLNPSIV TLGEYEASLN RAGFLPRFKN ALVYYSAIFE  480
SLEPNLSRDS PERLQVERLL FGRRIAGVIG PDEPGTRRER MEDKEQWRIL MDSAGFESVA  540
LSRYARSQAE ILLWKYDYST LFSLIQSEPG FLSLAWNKVP LLTVSSWL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein