PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028071825.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 271aa    MW: 31287.1 Da    PI: 6.9958
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028071825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.6e-162166550
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     ks+  v + kR+  i+KK  ELS+LCd+++  i f++++++ +++
  XP_028071825.1 21 HKSRSRVMYKKRKDCIIKKTMELSILCDINAFTICFGPNNEVETWP 66
                    368889***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MEVENRIQIK KPIKRRIIDN HKSRSRVMYK KRKDCIIKKT MELSILCDIN AFTICFGPNN  60
EVETWPENPA HVKTLINAYK NNRRGKQLVQ AQQQQPSDHH RGLDDKIRGL LSWNDGWLCG  120
LSREQLMSLW KLMKLKLQEL ARRIELLMFS KMHYQYQPLI EPPMFVPLWP LNCYGVPGSS  180
GGDGGGELSV PLTWEFNETL EETTLNAMNN CDVNQMCLQF SSPLNELLFA SMYTMNPLQI  240
TEPQLGEETI SSSDTDSQVN PSLNVNMDWI I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11433KRRIIDNHKSRSRVMYKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-10M-type_MADS family protein