PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028071158.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 689aa MW: 77183 Da PI: 7.2562

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028071158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.9	4e-39	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++slv+eAear+rdPvyG++g i lq+++ +l+++la XP_028071158.1 11 SCAACKFLKRRCSPNCLFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLVFEAEARLRDPVYGCIGAIALLQKKMVELQHDLA 105 6*********************************************************************************************9 PP DUF260 96 llkee 100 ++++ XP_028071158.1 106 IARTR 110 98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MKGQEPRSSS SCAACKFLKR RCSPNCLFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LVFEAEARLR DPVYGCIGAI ALLQKKMVEL QHDLAIARTR LARYVVAKPS 120 HPHQHQHQHQ QQPQQHPQQQ QQPQQQQQQI LPQSLVNNSI ITPNQIPNQN LQQPVTYSQV 180 QQQQLSTRNA QSQQSIPSSN RNSIQPQLTQ LPQDLQYQQQ IEQASILQRP PQQQQAQLQQ 240 TSLQSLQSSL SQNPQGQNTL QQSLSEQRLQ LQLLQKLQQQ QQLLSPVSPR LEPQLPQQQQ 300 AHQQNRQLQH LPLSQHQQIS GNSFSTSTLM QSPQFVNQLQ GQHKPIRAHS GLTEGDAPSC 360 STSPSTNNCQ VSPSNFLSRN QQKASVLVED SVVDPATNMV QELQNKPEIR IKHELPGSKG 420 PEQQKYKVTV TDQLDVSSAT SYCLDASGLQ QNFALPSFSM DGDVQSQSRN NNLPFATNVD 480 SLTPDALLSR GFDSGKDIQN LLSNYGCTPR DIETELSTAA MSSQSYGVPN MSFKPGCSTD 540 VAINEAGVLN GGLWANQTQR MRTYTKVQKR GSVGRTIDVT RYKGYDELRH DLARMFGIEG 600 QLEDSQRTEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQQM SLDGDLSHVP 660 VPKQACSGTD SGNAWRGHYD DNIANSFNR

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MKGQEPRSSS SCAACKFLKR RCSPNCLFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LVFEAEARLR DPVYGCIGAI ALLQKKMVEL QHDLAIARTR LARYVVAKPS  120
HPHQHQHQHQ QQPQQHPQQQ QQPQQQQQQI LPQSLVNNSI ITPNQIPNQN LQQPVTYSQV  180
QQQQLSTRNA QSQQSIPSSN RNSIQPQLTQ LPQDLQYQQQ IEQASILQRP PQQQQAQLQQ  240
TSLQSLQSSL SQNPQGQNTL QQSLSEQRLQ LQLLQKLQQQ QQLLSPVSPR LEPQLPQQQQ  300
AHQQNRQLQH LPLSQHQQIS GNSFSTSTLM QSPQFVNQLQ GQHKPIRAHS GLTEGDAPSC  360
STSPSTNNCQ VSPSNFLSRN QQKASVLVED SVVDPATNMV QELQNKPEIR IKHELPGSKG  420
PEQQKYKVTV TDQLDVSSAT SYCLDASGLQ QNFALPSFSM DGDVQSQSRN NNLPFATNVD  480
SLTPDALLSR GFDSGKDIQN LLSNYGCTPR DIETELSTAA MSSQSYGVPN MSFKPGCSTD  540
VAINEAGVLN GGLWANQTQR MRTYTKVQKR GSVGRTIDVT RYKGYDELRH DLARMFGIEG  600
QLEDSQRTEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQQM SLDGDLSHVP  660
VPKQACSGTD SGNAWRGHYD DNIANSFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-148	ARF family protein