PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028071029.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 325aa MW: 37387.5 Da PI: 8.6418

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028071029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	164	183	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_028071029.1 164 FACSICSKTFNRYNNMQMHM 183 78*****************9 PP
2	zf-C2H2	16.1	3.1e-05	248	270	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ XP_028071029.1 248 FMCRKCGKTFAVKGDWRTHEKNC 270 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MSIRSYHEAP TFIEWLKPSS SPPSSSSSSS SILTEQVHFS NTMSFLKLPL FYHHQQQQQR 60 QEKDDIALET IQCLPLLSRL TEARPLKEEV EKEDFGIKSE KFEKVKVALH IGLPNTGESD 120 VETKSFKCKD EENKEKRFSG DNFNAESRFW IPTPAQILIG PMQFACSICS KTFNRYNNMQ 180 MHMWGHGSEY RKGPESLRGT QPAAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK 240 RKHGSKPFMC RKCGKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS 300 PHPSLEGFED EKECITGSED EMAHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-121	C2H2 family protein