PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028069696.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 324aa    MW: 37228.3 Da    PI: 5.5932
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028069696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.8e-17444343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+vt+ kR++g+ KK  EL +LCd++v++ii++++
  XP_028069696.1  4 IRNEKARYVTYQKRKKGLKKKTCELQTLCDVQVCLIIYGPK 44
                    89*************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MELIRNEKAR YVTYQKRKKG LKKKTCELQT LCDVQVCLII YGPKLDDNST EVEIWPQNPN  60
DIQRLIDTYR NQSIEDRHRR TLDLSNFFEN RNQEIEDALV KLRKKNDKAL YSTWDDCYND  120
LSEGQLRAFE GMLEGKLADV KARVEFMKGT QALASLNDME QTTQQNHSNH FMQGLFGTTS  180
LQMGIIHEEM PISSLNLLHE INDISRHYPF DQTDHQGIVE LDAKSMAISP MMMPMNNIND  240
THYTQLGGMS SSNLQCIDPL KTSIYNDPIM LLPSLEPVLT GVSCTESSFS MSRMMENEVR  300
KNHHPSPSMA YYGGSSMQTM SPYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-17M-type_MADS family protein