PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028064972.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 591aa    MW: 66982.5 Da    PI: 5.242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028064972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.83.8e-892175891374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPi 90 
                     l +lLl++Ae v  ++ e+a++lL++   las +g+p+qR++ yf+eAL++r+ r++ + ++  ++ e++++      +s++l ++k+ +e  P+
  XP_028064972.1 217 LAHLLLAAAEKVGYQQYERASRLLKQCDWLASDTGNPVQRVVYYFVEALRERIDRETGRFVSRSTVGEQEKEVmaslgVSSNLVSMKIHQE-IPF 310
                     579****************************************************666666555555554444467666666667777666.5** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ++  ++  qa+le v+ e  +H +Df i+ G+QW+ L+qaLa+R+  +  +l++T+vg    ++ +++eet +rLa fAe+l ++f+f+v++  
  XP_028064972.1 311 TQVMLFAGIQAVLENVALEINIHLVDFHIKSGVQWIVLMQALAERAtYPIQHLKLTAVGT---TEGHKMEETCKRLATFAESLSLSFSFKVVLLL 402
                     **********************************************77778*********...57999***********************9999 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     +++d++ e+++v+ +Ea+++ +   l  + +++ +le     ++++++sl+P ++vv+e ea+hns+sF++rf+e+l ++sa+fd+le  + re+
  XP_028064972.1 403 DMKDIKKEHFDVEAKEAVVIYSNTILRDMISRPNCLET----LMRVIRSLNPSIMVVIEVEANHNSPSFFNRFIETLFFFSAFFDCLEDCMEREN 493
                     ***********************999999966666666....***************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + r+ vE  ++++ i n+va+eg+er+ r  +++ Wr+ + ++G+  +++se+   qa+l++++++ +   ++e++ ++l+ gWk+ p+ s++ W
  XP_028064972.1 494 KYRMIVEGIYFRNGIHNIVATEGEERVTRSVKMNVWRAFFARFGMVGLEMSESSLYQANLIVNRFScGSSCTLENDGECLTVGWKGTPIHSLTTW 588
                     ******************************************************************9999************************* PP

            GRAS 374 r 374
                     +
  XP_028064972.1 589 K 589
                     8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    
MTNAMFSFSS FNIDEIQGGY NSLREYEKDQ ALSKDNQNPL SGLENWGDIG SLCSKYGFYQ  60
EIVAADKSVY FPKVEPPPPL PPLPPHQSPP PISNYGILGD FQFNPAFPLT EPIPETKTVF  120
ETKKEEQYCF SSASLELLSN YAGGLKKLKG EKYCSNLGDD ETKGGGQKLS TEEIMRVAGE  180
RYIQFSTQRV DEIFMLAHPY GSSFSGLCLE ETRDVELAHL LLAAAEKVGY QQYERASRLL  240
KQCDWLASDT GNPVQRVVYY FVEALRERID RETGRFVSRS TVGEQEKEVM ASLGVSSNLV  300
SMKIHQEIPF TQVMLFAGIQ AVLENVALEI NIHLVDFHIK SGVQWIVLMQ ALAERATYPI  360
QHLKLTAVGT TEGHKMEETC KRLATFAESL SLSFSFKVVL LLDMKDIKKE HFDVEAKEAV  420
VIYSNTILRD MISRPNCLET LMRVIRSLNP SIMVVIEVEA NHNSPSFFNR FIETLFFFSA  480
FFDCLEDCME RENKYRMIVE GIYFRNGIHN IVATEGEERV TRSVKMNVWR AFFARFGMVG  540
LEMSESSLYQ ANLIVNRFSC GSSCTLENDG ECLTVGWKGT PIHSLTTWKF R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-48GRAS family protein