PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028064604.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 290aa MW: 32522.8 Da PI: 4.6849

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028064604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	6.9e-40	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+++C+lapyfp +qpk f+n+h+lFG+sn+lk+lk+l+++++++amss++y++++r + Pv+G++gvi++l+ q++q +el+ XP_028064604.1 10 ACAACKYQRRKCSSECPLAPYFPPDQPKMFQNAHRLFGVSNILKILKQLDPSQKREAMSSIIYQSNIRDKYPVHGCCGVIHHLEYQICQGLEELH 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_028064604.1 105 AVHAQL 110 *99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MTLKGGTSQA CAACKYQRRK CSSECPLAPY FPPDQPKMFQ NAHRLFGVSN ILKILKQLDP 60 SQKREAMSSI IYQSNIRDKY PVHGCCGVIH HLEYQICQGL EELHAVHAQL ALYQQQHHHE 120 ISSTLNDSTS ELQLGVGPPS NNNALTLFNQ DVPQTFNGVA TLPIASNQLY TNSENDGYNS 180 GYVDNDNVVN TFWINDNNSN NDNNHDPMEL QSQLVAFQQL TIQQEPAQDD DEMHPFFEII 240 DDRQSSYIDS KEAYESSSDS SLKDTTHPIE HIADNELKNA AACFSLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-47	LBD family protein