PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028064229.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 376aa MW: 42159.6 Da PI: 8.6884

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028064229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.1e-07	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_028064229.1 196 HYCQVCGKGFKRDANLRMHMRAH 218 68*******************99 PP
2	zf-C2H2	10.8	0.0015	290	313	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + XP_028064229.1 290 YVCKRCNtKQFSVLSDLRTHEKHC 313 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MNTSCFPNTS QGFQQIMYAG VTENMVSSSL EATSGVDAHS NSLLYSLSAL KEKVNQVQSL 60 VSIFVSADQN QQAESTAMAI ASVGTLIQEI IVTASSMMFT CQQMVLGSNS IPEVNNNTGE 120 LRNHRDNKLH ERGQGLYSSG ETLDWYGENY NNPIAVRDNN NEAGRRDEFP ERHGNSEISQ 180 DIIELNVADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKSSAALSN PMKNRAESTN 240 TNKENIKIAM KYSCPQEGCR WNKKHAKFQP LKSMICVKNH YKRSHCPKMY VCKRCNTKQF 300 SVLSDLRTHE KHCGDLKWKC SCGTTFSRKD KLMGHVALFV GHTPATTTMT INSSSSSKIG 360 KVEQHDQVPM RVYNNI

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MNTSCFPNTS QGFQQIMYAG VTENMVSSSL EATSGVDAHS NSLLYSLSAL KEKVNQVQSL  60
VSIFVSADQN QQAESTAMAI ASVGTLIQEI IVTASSMMFT CQQMVLGSNS IPEVNNNTGE  120
LRNHRDNKLH ERGQGLYSSG ETLDWYGENY NNPIAVRDNN NEAGRRDEFP ERHGNSEISQ  180
DIIELNVADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKSSAALSN PMKNRAESTN  240
TNKENIKIAM KYSCPQEGCR WNKKHAKFQP LKSMICVKNH YKRSHCPKMY VCKRCNTKQF  300
SVLSDLRTHE KHCGDLKWKC SCGTTFSRKD KLMGHVALFV GHTPATTTMT INSSSSSKIG  360
KVEQHDQVPM RVYNNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-118	C2H2 family protein