PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028061076.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 359aa    MW: 40460.5 Da    PI: 5.6401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028061076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS218.43.6e-673535474374
            GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..eg.......................ppslR 143
                      +++l   k++++  P+++++++t  qa+l++v++++r+H iDf+i  G+    L+qaLa R   ++                          l+
  XP_028061076.1  35 WQQVLIKNKFLQQELPFVQVAQFTGIQAVLDSVASAKRIHFIDFGIRSGMNATVLIQALAVRHrvGPalrqkfalgpdelraglvrhecpVELLK 129
                     5667777899**************************************************99965337777888886666666666654333566 PP

            GRAS 144 iTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                     +T v+    +s+ ++eetg+rL +fA+++++pf f+++++++++dl+ + ++v+ gEa++V +   l ++ ++++ le     +++++++lsP v
  XP_028061076.1 130 VTDVAT---TSELAVEETGKRLLSFADTINLPFFFKAVLVSDIKDLNEDVFEVEAGEAIVVYSPWFLRNMTSRPHRLEA----LIRVIRNLSPCV 217
                     666665...39***********************************************************977777777....************ PP

            GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                     +vv+e +a++++++F++rf+eal +y + fd+lea + r +  rik E+++++  i n v++eg+er+ rh ++  W+e ++++ + + +ls+  
  XP_028061076.1 218 MVVTEIDANTDAPTFMDRFVEALFFYGSQFDCLEACINRCNPMRIKNEAMYMKYGIHNTVTTEGEERTTRHMKVDAWSEFFGRFQMVEKELSSAC 312
                     *********************************************************************************************** PP

            GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       qa+l+++k++ + g + + + ++l++gWk+ p+ s+SaW+
  XP_028061076.1 313 FYQARLIVNKFAcGSGCTFDMNGNCLLIGWKGTPISSLSAWK 354
                     *****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MGKTSADHGH EGCETEQPLH VEEAVNDVQP AVFAWQQVLI KNKFLQQELP FVQVAQFTGI  60
QAVLDSVASA KRIHFIDFGI RSGMNATVLI QALAVRHRVG PALRQKFALG PDELRAGLVR  120
HECPVELLKV TDVATTSELA VEETGKRLLS FADTINLPFF FKAVLVSDIK DLNEDVFEVE  180
AGEAIVVYSP WFLRNMTSRP HRLEALIRVI RNLSPCVMVV TEIDANTDAP TFMDRFVEAL  240
FFYGSQFDCL EACINRCNPM RIKNEAMYMK YGIHNTVTTE GEERTTRHMK VDAWSEFFGR  300
FQMVEKELSS ACFYQARLIV NKFACGSGCT FDMNGNCLLI GWKGTPISSL SAWKFLQEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-42GRAS family protein