PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028060869.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 599aa    MW: 67557.7 Da    PI: 4.7678
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028060869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.82.7e-912255971374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91 
                     lv+ Ll+ Ae v +++ e+a +lL++ ++l+s +g+p+qR++ yf eAL++r+ r++ ++ ++ + ++   +        +laa  +f++  P++
  XP_028060869.1 225 LVQNLLASAEKVGQQQYERAGKLLSQCHDLSSDTGNPVQRAVYYFSEALRERIDRETGRITSKGSGKKLMLDLnealICPNLAAIIAFHQEMPFY 319
                     6899***************************************************88888888766665432223445566667777******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     +++++   qaI e v ++++vH iD++i +G+Q + L+qaLa R+e+p  +l+iT+vg    +sk ++e tgerL +fA+++++pf+fnv+++++
  XP_028060869.1 320 QVCQFSGMQAIIEHVGESKKVHLIDLEIRNGIQCIGLIQALAGRSESPLeRLKITAVGT---NSKSTIEDTGERLMSFAQSMNLPFSFNVVLVSD 411
                     *********************************************66544*********...579****************************** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     + dl+ + ++++ +E++aVn+  +l  +l ++  les    +++++k+++P ++vv+e ea+hns+ F++rf+eal +y a+fd+le  + r + 
  XP_028060869.1 412 MLDLNEDLFDLEAEETVAVNSTCSLRAMLTRPDRLES----LMRVLKNINPCLMVVTEVEANHNSPIFVNRFIEALFFYGAFFDCLEDCMDRYNP 502
                     *****************************87777777....****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+  E ++l+++i+n+va+eg+er+ rh + + Wr+ + ++G+ + ++s++   qa+l+ +k++ +   +++ + ++l++gWk+ pL s+SaW+
  XP_028060869.1 503 NRNISESMYLSQAIQNIVATEGEERIIRHVNINVWRAFFARFGMVEEEMSTSSLYQASLVTKKFAcGSSCMIDMDGKCLIIGWKGTPLHSLSAWK 597
                     *****************************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    
MSEMFSLEQF NFGRVSDNYS SSMGFERDEG MNAEEHTHLY GEEEWGGKMA IDSFSSDLGF  60
FVENAAEDGL LLSRYQQERQ QQLLPYFGIL DDLYLDIVSP PFQSCHEETA KHAIVDTENS  120
LLDEPKKEKP CAIPFASLGI LKNYWSGFKR LNREKVEVPS YGIACTKPES KLSGRKLSTM  180
DILRLAGEKF VHSSSQTVDD HSTLSHPFGN SFRSLSDDEI KDMELVQNLL ASAEKVGQQQ  240
YERAGKLLSQ CHDLSSDTGN PVQRAVYYFS EALRERIDRE TGRITSKGSG KKLMLDLNEA  300
LICPNLAAII AFHQEMPFYQ VCQFSGMQAI IEHVGESKKV HLIDLEIRNG IQCIGLIQAL  360
AGRSESPLER LKITAVGTNS KSTIEDTGER LMSFAQSMNL PFSFNVVLVS DMLDLNEDLF  420
DLEAEETVAV NSTCSLRAML TRPDRLESLM RVLKNINPCL MVVTEVEANH NSPIFVNRFI  480
EALFFYGAFF DCLEDCMDRY NPNRNISESM YLSQAIQNIV ATEGEERIIR HVNINVWRAF  540
FARFGMVEEE MSTSSLYQAS LVTKKFACGS SCMIDMDGKC LIIGWKGTPL HSLSAWKFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-62GRAS family protein