PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028059193.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26478.2 Da PI: 9.3402 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95 | 3.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+S+LCdae+a+iifs++gkl+eys+ XP_028059193.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISILCDAEIALIIFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 88.3 | 1.5e-29 | 82 | 173 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++++ + s++ e akLk+++e Lq++qRhl+GedL++L+lkeLq+Le+qL+++lk+iR++Kn+l++e+i+elqkk ke ++++k+ +++le XP_028059193.1 82 ATDTESQGSWTLENAKLKARLEVLQKNQRHLMGEDLDTLNLKELQNLEHQLDSALKHIRTRKNQLMYESISELQKKIKEKEKKEKEQQAQLE 173 456677889*******************************************************************9999998888777765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISILCD AEIALIIFST KGKLFEYSTD 60 SCMERILERY ERYSHAERQL IATDTESQGS WTLENAKLKA RLEVLQKNQR HLMGEDLDTL 120 NLKELQNLEH QLDSALKHIR TRKNQLMYES ISELQKKIKE KEKKEKEQQA QLEQHQNHDL 180 NSSSVVISQS LHSLNIGGAY QAAVGDVEGA PHQIQNNAVM PPWMISHING |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-83 | MIKC_MADS family protein |