PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028057708.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 356aa MW: 40414.3 Da PI: 7.6186

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028057708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.5e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl XP_028057708.1 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38	3.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd l+ + G++ W+ Ia+ ++ gRt++++k++w++ XP_028057708.1 69 GGFSEEEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQARRG NSCQKQRMRK GNENSSMVSS HNTNNQAPYW PELPAPMAIP YSNQEPRFND 180 HVSIRKVLIK LGGKFSDDHQ YQHPIQDTAT NLHHHHHQFL PVNLSYSHQA YAPSIEMVYS 240 SSTDPLNTDT YQLANTQYGI DGTGMTMLPG QSGFQAEFEE MLYNNNNPQR LDGLEFFYGD 300 MVVSNGTETT SGESMDWGEM SSMSYPPMIS NYEGLLQQGT MLQESTFDEL KSTTTV

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQARRG NSCQKQRMRK GNENSSMVSS HNTNNQAPYW PELPAPMAIP YSNQEPRFND  180
HVSIRKVLIK LGGKFSDDHQ YQHPIQDTAT NLHHHHHQFL PVNLSYSHQA YAPSIEMVYS  240
SSTDPLNTDT YQLANTQYGI DGTGMTMLPG QSGFQAEFEE MLYNNNNPQR LDGLEFFYGD  300
MVVSNGTETT SGESMDWGEM SSMSYPPMIS NYEGLLQQGT MLQESTFDEL KSTTTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-79	MYB family protein