PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028057264.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 557aa    MW: 62281.2 Da    PI: 4.4477
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028057264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS117.81.4e-361464502304
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++l+ +  ea++++++ela+a+++ +se +sp g  ++Rl  y+ + L ++              +++s   s++ laa+k+f++++P+ kf+h 
  XP_028057264.1 146 IHLVKAYGEAIDEEHTELAEAIMKCISEKVSPVGGVVERLLYYLFQSLDKQAGY----------LKQES---SKNFLAAFKAFYQIFPYGKFAHS 227
                     677778889***************************************999876..........34444...789******************** PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakr 185
                     +aNqaI ea+ ++ e +HiiD d+++G+QW ++++aL  +   + ++R+T ++ +e +     s  + eet++ L + A+++g+++  + +   +
  XP_028057264.1 228 AANQAIIEAMPHDvEVIHIIDCDMGEGIQWSSMIEALGYQ---QREIRLTSIKWSEDDsngdpSLWRFEETKRWLYDHARSFGLKLTVDNM---E 316
                     **********9998899********************986...567******998877888888899*********************997...6 PP

            GRAS 186 ledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe...adhnsesFlerflealey 263
                     l+dl +e  +vk+    +E la n+++ l ++   ++ ++ + +++L++ k+l          +  +v+v + +   ++ +s+sF   +   l +
  XP_028057264.1 317 LHDLATEIKKVKQkggrREWLAFNCMVGLPHMG--RMRSRRAVSKFLSVAKELlaytanydynNMGIVTVGDGDawvTSKSSSSFGSFLDGHLVH 409
                     677755555555556889**************8..4444445699******9955544444444579*******553334777999999999*** PP

            GRAS 264 ysalfdsleaklpres.eerikvErellgreivnvvacegae 304
                     y al++s+e  lp +  + r+ +E  ++++ i + ++c++++
  XP_028057264.1 410 YQALLESIEWALPIHLgQSRTILECLFVAPLI-SSISCSQKW 450
                     *************9995556666655555555.556666554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MQSSSTSFNN RNSSFDEFGA YGLALDNAMD HDEFSPPLTI TEDSSVIISR IPTTFPDNFM  60
DFPVITLPEI DFSIALEDFE IENMFESSEE REKSFLSQQF LIDGEDGWSL SSPMKSSDTT  120
MDMSLNEASL TLPTEDMELD NQESLIHLVK AYGEAIDEEH TELAEAIMKC ISEKVSPVGG  180
VVERLLYYLF QSLDKQAGYL KQESSKNFLA AFKAFYQIFP YGKFAHSAAN QAIIEAMPHD  240
VEVIHIIDCD MGEGIQWSSM IEALGYQQRE IRLTSIKWSE DDSNGDPSLW RFEETKRWLY  300
DHARSFGLKL TVDNMELHDL ATEIKKVKQK GGRREWLAFN CMVGLPHMGR MRSRRAVSKF  360
LSVAKELLAY TANYDYNNMG IVTVGDGDAW VTSKSSSSFG SFLDGHLVHY QALLESIEWA  420
LPIHLGQSRT ILECLFVAPL ISSISCSQKW EMSCCDRSGL GLGLEGWRVS ERSLMEVEEM  480
VRDGENLYGV RIEEILTITD AVATANVGGD LNPGATGLPT PTVVTSVVNS GITPAVPAGP  540
LSHHERPKKF TGENFKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-18GRAS family protein