PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028057061.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 297aa    MW: 34662.5 Da    PI: 7.3052
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028057061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.81.2e-17444343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+vtf kR++g+ KK +EL +LCd++v++ii++++
  XP_028057061.1  4 IRNDKTRYVTFQKRKKGLKKKTYELKTLCDVKVCLIIYGPK 44
                    89*************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MELIRNDKTR YVTFQKRKKG LKKKTYELKT LCDVKVCLII YGPKINDRPT DDQAEIWPPN  60
LDVIQHLIDT YKNQSSEDRI RRTLRLSNFF EDRYQKIEDM LVKLRKKNDE AGYFTWDDRY  120
NGLSKEELRE FESVLEGKLQ DVKARVAFMK GIDQKLPVAC INDNSHTQTT QNQSYFMHGC  180
MFGTEVDNGI ANLQYSFNQA QVDANSKENP MMMMTMMPMN NNQYYNQFGG VSNSNFICNP  240
LDRLIYYDPM MLENVIVNNP SQPVSYCNPS IQTMSPYMQC LKMECASSSV HPSQLDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.14e-10M-type_MADS family protein