PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056281.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 432aa MW: 47155.2 Da PI: 8.4122

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	39	64	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_028056281.1 39 GEPDCSYYIRTGLCRFGATCRFNHPP 64 6899********************97 PP
2	zf-CCCH	38.9	1.5e-12	85	109	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_028056281.1 85 QPECQYYLKTGTCKFGATCKFHHPR 109 799********************96 PP
3	zf-CCCH	36.6	7.6e-12	131	155	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H+p XP_028056281.1 131 ETECAYYLRTGQCKFGSTCKFHHPP 155 578********************97 PP
4	zf-CCCH	37.9	2.9e-12	291	317	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_028056281.1 291 PGQPECQFYMKTGDCKFGAVCRFHHPR 317 5789*********************96 PP
5	zf-CCCH	40.2	5.8e-13	337	363	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_028056281.1 337 PGEPLCIFYSRYGICKFGPSCKFDHPM 363 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MEYDAGISMS QPYDEDTLWQ MNLRSSETME LGPYPVREGE PDCSYYIRTG LCRFGATCRF 60 NHPPNRKLAI ATARMKGEYP ERIGQPECQY YLKTGTCKFG ATCKFHHPRD KAGIAGRVPV 120 NVLGYPLRPN ETECAYYLRT GQCKFGSTCK FHHPPPSNMM VSLRGSPVYP SAHSPTTADQ 180 QSYPGGIANW PLSRASFIPS PRWQGPSSYG PMILPQGVVS VPGWNAYSGQ LSSMSSPESQ 240 QQTAGNSIYG NSRQSEAANA GSQGTLSPYR SGSVPVGYYA LQRENVFPER PGQPECQFYM 300 KTGDCKFGAV CRFHHPRERL IPAPDCVLSP IGLPLRPGEP LCIFYSRYGI CKFGPSCKFD 360 HPMGVLTYNL AASSSSADAP VVRRLLASSS GSGVLALSSE GLVEAGSSKP RRLSLSESRS 420 MPSGDDKIDT EG

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MEYDAGISMS QPYDEDTLWQ MNLRSSETME LGPYPVREGE PDCSYYIRTG LCRFGATCRF  60
NHPPNRKLAI ATARMKGEYP ERIGQPECQY YLKTGTCKFG ATCKFHHPRD KAGIAGRVPV  120
NVLGYPLRPN ETECAYYLRT GQCKFGSTCK FHHPPPSNMM VSLRGSPVYP SAHSPTTADQ  180
QSYPGGIANW PLSRASFIPS PRWQGPSSYG PMILPQGVVS VPGWNAYSGQ LSSMSSPESQ  240
QQTAGNSIYG NSRQSEAANA GSQGTLSPYR SGSVPVGYYA LQRENVFPER PGQPECQFYM  300
KTGDCKFGAV CRFHHPRERL IPAPDCVLSP IGLPLRPGEP LCIFYSRYGI CKFGPSCKFD  360
HPMGVLTYNL AASSSSADAP VVRRLLASSS GSGVLALSSE GLVEAGSSKP RRLSLSESRS  420
MPSGDDKIDT EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-178	C3H family protein