PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028055533.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 295aa MW: 32949.9 Da PI: 7.3959

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028055533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.6e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l XP_028055533.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELNAAQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQVDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_028055533.1 102 NAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELNAAQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKQVQVDL YNAKKELANY IGPSAMLPIL 120 QHPGFMQQQQ HPNTPSSSTV IPYNMSPVSG LSAGNSHNTQ LLMREQHHQH QHQQMLEAQQ 180 MAAVVAAREQ QEMLRTYEQQ QQQQQQQQEL VRFNDGFDPA SGPVNVSGFN NGAMSPSLAL 240 GCFDSPYQIQ QQAQEHHSHH HQLQPQLLLQ QQQPQPPQAR QRSGSEEGGR VGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-78	LBD family protein