PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028054738.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 589aa    MW: 65185.2 Da    PI: 4.9084
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028054738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.71.7e-1092225882373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++Ll+c + ++++d e+a + L+r++e +s++gdp++R+ +yfteAL +r+++   +  k+ +  et+   s+e + ++k++++++P+ kf+hl
  XP_028054738.1 222 LKALLDCSR-FAESDPEKAVKSLNRVRESVSEHGDPIERVGFYFTEALFSRVSH---QAEKTPTIFETT---SEEYTLSYKALNDACPYSKFAHL 309
                     578999999.566799*************************************9...555555666665...889999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqa+lea+e+++++Hi+Df++ qG+QW a+lqaLa+R++g+p ++Ri g+ +p+ g   + +l++tg+rL++fA+ lg++fef++ v + ++d
  XP_028054738.1 310 TANQALLEATERAKKIHIVDFGVVQGVQWSAFLQALATRTAGKPdMVRISGIPAPALGksPAAALHATGNRLRDFAKLLGLNFEFEP-VLTPIQD 403
                     ****************************************776669********999998999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+p+E+laVn++lql++llde+ ++ +   + L+l ksl+P +v++ e ea++n++ Fl rf +al yysa+f+sle +l+r+s er 
  XP_028054738.1 404 LDGSSFRVEPDEVLAVNFMLQLYNLLDETDDVVE---TALRLAKSLNPSIVTLGEYEASLNRAGFLPRFKNALVYYSAIFESLEPNLSRDSPERL 495
                     **************************99999999...********************************************************** PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                      vEr l+gr+i  v+   +   rrer+e +e+Wr  +++aGF++v+ls +a +qa+ ll k++ s  +++ +++  ++ l W++ pL++vS+W
  XP_028054738.1 496 QVERLLFGRRIAGVIGPDEPGtRRERMEDKEQWRILMDSAGFESVALSRYARSQAEILLWKYDySTLFSLIQSEPGFLsLAWNKVPLLTVSSW 588
                     ***************9876655*****************************************9999998877766666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    
MTYMCANSGN LIAIAQQVIK QKQQQEQEQH HHQQQQQLVG VPLFLSQPMD HHQPDPLHQP  60
TMGYAFADPF PVAAPDHGDE PGFQFPNLEH HPAAFRFADF GGGSGGEFDS DEWMESLIGA  120
GDSTDSSNPW QSTAADFSIY ASDPFVACPS RLSVASSPPS DLNRVMFSNT QKNASLLQPQ  180
SSLPWVPSSP VPQSETNPLP KNNDAVAGAS KAPEHDSSKP LLKALLDCSR FAESDPEKAV  240
KSLNRVRESV SEHGDPIERV GFYFTEALFS RVSHQAEKTP TIFETTSEEY TLSYKALNDA  300
CPYSKFAHLT ANQALLEATE RAKKIHIVDF GVVQGVQWSA FLQALATRTA GKPDMVRISG  360
IPAPALGKSP AAALHATGNR LRDFAKLLGL NFEFEPVLTP IQDLDGSSFR VEPDEVLAVN  420
FMLQLYNLLD ETDDVVETAL RLAKSLNPSI VTLGEYEASL NRAGFLPRFK NALVYYSAIF  480
ESLEPNLSRD SPERLQVERL LFGRRIAGVI GPDEPGTRRE RMEDKEQWRI LMDSAGFESV  540
ALSRYARSQA EILLWKYDYS TLFSLIQSEP GFLSLAWNKV PLLTVSSWL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein