PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028052411.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C2H2
Protein Properties Length: 399aa    MW: 44282.9 Da    PI: 8.9531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028052411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-07224246123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_028052411.1 224 HYCHVCGKGFKRDANLRMHMRAH 246
                     68*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    
MISGATSCYP NVSQGLQMYG ITEADVVSSS LGPTSGSDTH SNSLLYSLSV LKEKVHQVQS  60
LVSIFISPPQ SQPAESTAIA IASMGTLIQE IIVTASAMMF TCQQMSLGST LGNNNTDESQ  120
NRRVKLPGVT GLSQQQPNCG PTRFVHVGEE SRQGFYSSET IDWYGDNYNT CSANDTNNNN  180
NNNRTITMTV GDKSEARSEK NELSPKNYDI IELDAADLLA KYTHYCHVCG KGFKRDANLR  240
MHMRAHGDEY KSSAALSNPL KNNNANETGN KDGGETKPVR KYSCPQEGCR WNKKHAKFQP  300
LKSMICVKNH YKRSHCPKMY VCKRCNRKQF SVLSDLRTHE KHCGDLKWQC SCGTTFSRKD  360
KLMGHVALFV GHTPAINSLA KMGRVEQQRD QAQMRVGNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-116C2H2 family protein