PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052337.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 534aa MW: 59063.8 Da PI: 7.5527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	54	75	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k Fs+ L H+r H XP_028052337.1 54 VCKVCKKGFSSGKALGGHMRIH 75 6*******************99 PP
2	zf-C2H2	11.7	0.00078	106	125	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++C+k F++ +L H+r XP_028052337.1 106 VCSICSKNFPSMKSLFGHMR 125 6******************8 PP
3	zf-C2H2	11.5	0.00094	382	404	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F+++ L H ++H XP_028052337.1 382 YKCSTCNKCFPTHQALGGHRSSH 404 9***************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MEADHDQENQ FPVIGLSNKQ VCSGEEKPWI KLKIQKIEEQ EDQIRPRKND EPRVCKVCKK 60 GFSSGKALGG HMRIHVQNNK ELKTNQNQYN IGDSDKDNSG CYSKPVCSIC SKNFPSMKSL 120 FGHMRCHPER EWRGIQPPSR PPAAKDSSSY SSYVSDCEQL KADNQSYIDS DMGIQEIDLT 180 KSLVGWSATA KRGRRALIAA TGTMAEEKRL QDAVDDLMRL AHSGDSLDLE SGSGLTHKYR 240 VVVEATNSNS LTNKVETEGK NRVFESKKRK RIIDESEPPV DFTMDHHPGS TDMSHHVSVS 300 RGSNSVLVKN LEKGKGKAVL ETEPNFTDSD ESIPSEQLII NYKYKNNNKS AMIKKKKRMM 360 VKLSDLGLAQ IDQIHRPIDR YYKCSTCNKC FPTHQALGGH RSSHNKAKTS QTTIDESSYA 420 AAEDIPRADE TKENEGAGSS KPADSALHRC KICNKDFATG QALGGHKRCH WTGPVEAPSS 480 QATSSPGEAS QTGQKILGFD LNELPAMEDK DGVEDSEEHG SGYGFASSSY NSVS

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MEADHDQENQ FPVIGLSNKQ VCSGEEKPWI KLKIQKIEEQ EDQIRPRKND EPRVCKVCKK  60
GFSSGKALGG HMRIHVQNNK ELKTNQNQYN IGDSDKDNSG CYSKPVCSIC SKNFPSMKSL  120
FGHMRCHPER EWRGIQPPSR PPAAKDSSSY SSYVSDCEQL KADNQSYIDS DMGIQEIDLT  180
KSLVGWSATA KRGRRALIAA TGTMAEEKRL QDAVDDLMRL AHSGDSLDLE SGSGLTHKYR  240
VVVEATNSNS LTNKVETEGK NRVFESKKRK RIIDESEPPV DFTMDHHPGS TDMSHHVSVS  300
RGSNSVLVKN LEKGKGKAVL ETEPNFTDSD ESIPSEQLII NYKYKNNNKS AMIKKKKRMM  360
VKLSDLGLAQ IDQIHRPIDR YYKCSTCNKC FPTHQALGGH RSSHNKAKTS QTTIDESSYA  420
AAEDIPRADE TKENEGAGSS KPADSALHRC KICNKDFATG QALGGHKRCH WTGPVEAPSS  480
QATSSPGEAS QTGQKILGFD LNELPAMEDK DGVEDSEEHG SGYGFASSSY NSVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	5e-22	C2H2 family protein