PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc069822.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 398aa MW: 44767 Da PI: 9.9689

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc069822.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.6e-17	78	128	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ +++g+ Cse_sc069822.1_g010.1 78 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDQAAIRFRGH 128 78*****************......44***********************997 PP
2	AP2	40.9	5e-13	170	220	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f ++ eAa+a+++a+ k +g Cse_sc069822.1_g010.1 170 SKYRGVTLHK-CGRWEARMGQlH---G-KKYIYLGLFESELEAARAYDKAAIKCNG 220 89******.7**44433...4.6******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MILDLTLNLN SNDNVKPNTR KNDDRSLESV MITTKQFFPL DNGLRNDTLH DMHGVHEGEF 60 VLKQKMKKGR RGPRSRSSQY RGVTFYRRTG RWESHIWDSG KQVYLGGFDT AHAAARAYDQ 120 AAIRFRGHDA DINFNINDYH EGLKQLKNLT KEEFVHVIRR QSTGISRGSS KYRGVTLHKC 180 GRWEARMGQL HGKKYIYLGL FESELEAARA YDKAAIKCNG REAITNFEAS SYEGAPTPST 240 KSGANNIEYM DLNLGIAPPS FLNDTSRSMH QINHILSDTY EAGRTRIDPT TSMALRTQIP 300 LVRPPDQGSA TYCYFPVYQG TKLQKSKEVN SSLNRARQVH GPYSGANPAS SFSAAASSGF 360 GNSMISYSSS GAAHHQPYYR TSALAHQHYN PPMYYSRS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MILDLTLNLN SNDNVKPNTR KNDDRSLESV MITTKQFFPL DNGLRNDTLH DMHGVHEGEF  60
VLKQKMKKGR RGPRSRSSQY RGVTFYRRTG RWESHIWDSG KQVYLGGFDT AHAAARAYDQ  120
AAIRFRGHDA DINFNINDYH EGLKQLKNLT KEEFVHVIRR QSTGISRGSS KYRGVTLHKC  180
GRWEARMGQL HGKKYIYLGL FESELEAARA YDKAAIKCNG REAITNFEAS SYEGAPTPST  240
KSGANNIEYM DLNLGIAPPS FLNDTSRSMH QINHILSDTY EAGRTRIDPT TSMALRTQIP  300
LVRPPDQGSA TYCYFPVYQG TKLQKSKEVN SSLNRARQVH GPYSGANPAS SFSAAASSGF  360
GNSMISYSSS GAAHHQPYYR TSALAHQHYN PPMYYSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	6e-85	AP2 family protein