PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc065070.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 681aa MW: 73930.4 Da PI: 8.3282

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc065070.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.7	4.7e-39	491	591	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll+++p +r +a+ +++yeA+ar++dPvyG+v++i++lqqq+ Cse_sc065070.1_g010.1 491 PCGACKFLRRKCAPDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLHHVPVADRCEAVVTIAYEAQARIKDPVYGCVAHIFALQQQV 578 7***********************99******************************************************** PP DUF260 88 eqlkaelallkee 100 ++l+a+l ++k++ Cse_sc065070.1_g010.1 579 ACLQAQLMQVKTQ 591 *****999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MRLHALSRAC HHEDGLARFK WVTGDVEEFI VGITRPRVGR EVVPLGGVVV DEVLLDRVFS 60 LPITTVKSIP HSCRMAFSHA LVAALGKVAA MPTSIEAWVK LLLLPRCTLR VFRPSNRSGP 120 SNRQERKSGN RKSLQCLSIQ RSLAAWGGDG FDELILSLFA QPLRVAPGED GLGTRSGSSA 180 VCSNVKQCLR KVSDVHFTAA VKVLCSSGVA PYGTDTLTTL LAKHPILPPP VMPVSLLSEP 240 PLVVDVDSVL GCIQSFLKGT SCGRDGLRAQ HILDAFCGEG AAIAVGLLKA ISVVVNLCLG 300 GRCPKVLAEF VASAPLTPLL KPDNGIRPIA VGTIWRRLVS KVAMRGVKKE MSNYLGDFQF 360 GVGVPSGAEA VLHSANRFLH EFHSDGSLAM LTVDFSNATC QPMYIGEAVS VFDNGLRKAI 420 EAIVVCGGPF FGDFQWRLAS LPTRFGGLGL CSAEDVYTYA FVASRAQSWS LQDHILRGCA 480 FNIFMAATGS PCGACKFLRR KCAPDCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLHHV 540 PVADRCEAVV TIAYEAQARI KDPVYGCVAH IFALQQQVAC LQAQLMQVKT QLAAQGYTDS 600 RNLENQWSTN MVYQNYMNAA NFMNFNTSPQ SSMESVDHSN EGMAIHEIQS RNDHDHGFYK 660 KTLSESDLGE LQELAVRMMR N

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MRLHALSRAC HHEDGLARFK WVTGDVEEFI VGITRPRVGR EVVPLGGVVV DEVLLDRVFS  60
LPITTVKSIP HSCRMAFSHA LVAALGKVAA MPTSIEAWVK LLLLPRCTLR VFRPSNRSGP  120
SNRQERKSGN RKSLQCLSIQ RSLAAWGGDG FDELILSLFA QPLRVAPGED GLGTRSGSSA  180
VCSNVKQCLR KVSDVHFTAA VKVLCSSGVA PYGTDTLTTL LAKHPILPPP VMPVSLLSEP  240
PLVVDVDSVL GCIQSFLKGT SCGRDGLRAQ HILDAFCGEG AAIAVGLLKA ISVVVNLCLG  300
GRCPKVLAEF VASAPLTPLL KPDNGIRPIA VGTIWRRLVS KVAMRGVKKE MSNYLGDFQF  360
GVGVPSGAEA VLHSANRFLH EFHSDGSLAM LTVDFSNATC QPMYIGEAVS VFDNGLRKAI  420
EAIVVCGGPF FGDFQWRLAS LPTRFGGLGL CSAEDVYTYA FVASRAQSWS LQDHILRGCA  480
FNIFMAATGS PCGACKFLRR KCAPDCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLHHV  540
PVADRCEAVV TIAYEAQARI KDPVYGCVAH IFALQQQVAC LQAQLMQVKT QLAAQGYTDS  600
RNLENQWSTN MVYQNYMNAA NFMNFNTSPQ SSMESVDHSN EGMAIHEIQS RNDHDHGFYK  660
KTLSESDLGE LQELAVRMMR N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	1e-52	LBD family protein