PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc057331.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 447aa MW: 50790.4 Da PI: 4.512

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc057331.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.5	1.9e-37	57	154	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaCk++r++C+++C lap+f eq++ f+n+hklFG++n+l++l++++++++++am+s++y+A++r r Pv+G++gvi +lq q++ Cse_sc057331.1_g010.1 57 ACAACKYQRKRCTPECLLAPHFRPEQTEIFKNAHKLFGVRNILRILEQIDPSQKTEAMRSIIYQANMRDRSPVHGCLGVIYQLQYQIR 144 7************************************************************************************* PP DUF260 89 qlkaelallk 98 q+++el ++ Cse_sc057331.1_g010.1 145 QAEKELYAVL 154 **998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MIHAFVKQTP HLIRTLHFYL VSFNLHQILS YIRLLLSIFS SSCITQIMTL KGGTSQACAA 60 CKYQRKRCTP ECLLAPHFRP EQTEIFKNAH KLFGVRNILR ILEQIDPSQK TEAMRSIIYQ 120 ANMRDRSPVH GCLGVIYQLQ YQIRQAEKEL YAVLSQLEYY KQNQRRQHEI TLSPMDSSPE 180 SQQLQLGMGV VEQSGNPGLA LFQNEANDQQ FVPVAALPIS YSGNENVNDG YNTNNNVMHI 240 ESKDNDMNMS NVIWGQQTYY NDNDNDGKLV NSQPLNIQEE LQLGMGVVEQ SGNPGLALFQ 300 NEANDQQFVP VAALPISYSG NENVKDGYNT NNNVMHIESK DNDMNMSNVI WGQQTYYNDN 360 DNDGKLVNSQ PLNIQEEVTH DYDELYPFFD TIDDTQSYID SNKEPNESSS ESSQKETTQS 420 VQYVAGDNLK NAELQLGIVT EDYQTFA

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MIHAFVKQTP HLIRTLHFYL VSFNLHQILS YIRLLLSIFS SSCITQIMTL KGGTSQACAA  60
CKYQRKRCTP ECLLAPHFRP EQTEIFKNAH KLFGVRNILR ILEQIDPSQK TEAMRSIIYQ  120
ANMRDRSPVH GCLGVIYQLQ YQIRQAEKEL YAVLSQLEYY KQNQRRQHEI TLSPMDSSPE  180
SQQLQLGMGV VEQSGNPGLA LFQNEANDQQ FVPVAALPIS YSGNENVNDG YNTNNNVMHI  240
ESKDNDMNMS NVIWGQQTYY NDNDNDGKLV NSQPLNIQEE LQLGMGVVEQ SGNPGLALFQ  300
NEANDQQFVP VAALPISYSG NENVKDGYNT NNNVMHIESK DNDMNMSNVI WGQQTYYNDN  360
DNDGKLVNSQ PLNIQEEVTH DYDELYPFFD TIDDTQSYID SNKEPNESSS ESSQKETTQS  420
VQYVAGDNLK NAELQLGIVT EDYQTFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-48	LBD family protein