PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc031677.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | SRS | ||||||||
Protein Properties | Length: 325aa MW: 35632.7 Da PI: 7.8562 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 209.8 | 6.8e-65 | 85 | 260 | 2 | 153 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkre 77 +sg+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql + ++++ + +++++kr re Cse_sc031677.1_g020.1 85 NSGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQLMSVTQHHPLGTqqlslmmratgnDDQNPKRLRE 172 5799**************************************************9999887765444678887764332333333333 PP DUF702 78 lkskkqsalsstklssa.eskkeletss...................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkG 145 + + ++ ++ s+ + +P+ev+s+avfrcvrvs++dd+ee+laYqta s+gGhvfkG Cse_sc031677.1_g020.1 173 ---DPHRSMVASGSGSGgGGGM-----GmilpssqhhntcsgmgvglFPAEVNSPAVFRCVRVSAMDDAEEQLAYQTALSVGGHVFKG 252 ...3333333322222201111.....02222344666777778888***************************************** PP DUF702 146 iLydqGle 153 iLyd+G+e Cse_sc031677.1_g020.1 253 ILYDHGPE 260 ******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence |
MSRYFPLEAG IEISKVDKHH HHQIQIQDHD HNHDGIVSPY SLYLFKNEEI YNKSFELWQQ 60 YYQQQQHDAS SDSKVMRQGV YGSGNSGGMN CQDCGNQAKK DCPHMRCRTC CKSRGFHCQT 120 HVKSTWVPAA KRRERQQQLM SVTQHHPLGT QQLSLMMRAT GNDDQNPKRL REDPHRSMVA 180 SGSGSGGGGG MGMILPSSQH HNTCSGMGVG LFPAEVNSPA VFRCVRVSAM DDAEEQLAYQ 240 TALSVGGHVF KGILYDHGPE GSSSGSGAHG HHQQLNLITS STTAAATAST SVNPVVTNFI 300 DPSSAYPTPF SAFMAGTQFF PPPRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-66 | SRS family protein |