PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc029611.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 1045aa MW: 120995 Da PI: 7.2068

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc029611.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.3e-09	20	68	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45 ++WTteE+ l+ +vk++G+g W+ I +Rt++ ++ +w+ Cse_sc029611.1_g020.1 20 QKWTTEEEVALLAGVKKHGSGKWNMIRFDPEfasslINRTDNALRVKWH 68 79*******************9999955555555665899999999997 PP
2	Myb_DNA-binding	38.4	2.9e-12	393	443	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++WTt E+e l+dav+++G+g Wk + + + +R+ ++k++w+++ Cse_sc029611.1_g020.1 393 QKWTTKEEEALYDAVAKHGSGKWKIVLSDPQfasslVNRSNTDLKNKWRTL 443 69**********************************************985 PP
3	Myb_DNA-binding	27.9	5.3e-09	454	504	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++WT eE+e l +v+++G g W I + + R+ ++k++w+++ Cse_sc029611.1_g020.1 454 LKWTNEEEEALRAGVEKHGVGKWVDILSDSQfasslDSRSNMNLKDKWRTL 504 69**********************************************985 PP
4	Myb_DNA-binding	27.9	5.3e-09	515	565	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++WT eE+e l +v+++G g W I + + R+ ++k++w+++ Cse_sc029611.1_g020.1 515 LKWTNEEEEALRAGVEKHGVGKWVDILSDSQfasslDSRSNMNLKDKWRTL 565 69**********************************************985 PP
5	Myb_DNA-binding	29.8	1.4e-09	576	626	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++WTteE+e l +v+++G g W I + + R+ ++k++w+++ Cse_sc029611.1_g020.1 576 LKWTTEEEEALRAGVEKHGVGKWMDILSDSQfasslYSRSNIMLKDKWRSL 626 69********************************9*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence
MKKVGPNNML LRGSMSTQSQ KWTTEEEVAL LAGVKKHGSG KWNMIRFDPE FASSLINRTD 60 NALRVKWHRS LSKSLDVSNN INKVSTCRID DLMHLPPHPT KKRSINIRKK RVVEDFQGSV 120 AEEVSDSLSD LVEVVSDFQG GVVEEVSDSQ GGVVEELSDS QSDVDEDVSE SQVCLSEELT 180 GSQDYYHPGT LTRQKRGNCN NMLNQTRKLS SEKIPRYLEK IWLSFPEDKI SSFIHLDPLW 240 YNMYSNDSNK EKVLNWIKKK DIFSKKYVFF PIVQWRHWSV LIFCHFGESL ESKVKTPCIL 300 LLDSLEKADH SKQLEPLIRK FVLDIYMNLE RTEDAKLSRK MPFLVPKVPQ QRDGEECGFF 360 VLYYIKLFVE SAPESFSISD GYPYFERMAN EIQKWTTKEE EALYDAVAKH GSGKWKIVLS 420 DPQFASSLVN RSNTDLKNKW RTLSKKFDVP KSSLKWTNEE EEALRAGVEK HGVGKWVDIL 480 SDSQFASSLD SRSNMNLKDK WRTLSKKFDV PKSSLKWTNE EEEALRAGVE KHGVGKWVDI 540 LSDSQFASSL DSRSNMNLKD KWRTLSKKFD VPESSLKWTT EEEEALRAGV EKHGVGKWMD 600 ILSDSQFASS LYSRSNIMLK DKWRSLTKSS DVSNNRKKVR THRIHDQMHP RPHPTRKSKR 660 KRKKRVVEEV SDSQDHSVEK VRGSSTNKRS KKRVVEEVSD SHDYSAEEVS DSHDYAAEEV 720 SDSHDYSVEA VSDSHDYSVE KVRDTLTKKR SKKRVVEEVS DSHDYSVEEV SDSRDCSVEE 780 VRDSHDYSVE EVSDSHNYSV EEVSNSHDYP VDNASEIYPF EEVRDSQVYH HQCTSTRQRR 840 GTRSNMVNHA RKLNSEKVHS YLEKLWLSFS EDKKSSLAHL DPIWYNMYST GSNKEKVLKW 900 IKKKDIFSRK YVGHWSVLIF CHFGESLESK VNTPCILLLD SLEKTDHSTQ FEPLIRKFVL 960 DIYGKLKRTE DKRLLRKMPF LVPKVPQQRD GEECGYFVLY YIKLFVESAP ESFSISDGYP 1020 YFMTKDWFSS EEVDSFCKTL NSSDV

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence

MKKVGPNNML LRGSMSTQSQ KWTTEEEVAL LAGVKKHGSG KWNMIRFDPE FASSLINRTD  60
NALRVKWHRS LSKSLDVSNN INKVSTCRID DLMHLPPHPT KKRSINIRKK RVVEDFQGSV  120
AEEVSDSLSD LVEVVSDFQG GVVEEVSDSQ GGVVEELSDS QSDVDEDVSE SQVCLSEELT  180
GSQDYYHPGT LTRQKRGNCN NMLNQTRKLS SEKIPRYLEK IWLSFPEDKI SSFIHLDPLW  240
YNMYSNDSNK EKVLNWIKKK DIFSKKYVFF PIVQWRHWSV LIFCHFGESL ESKVKTPCIL  300
LLDSLEKADH SKQLEPLIRK FVLDIYMNLE RTEDAKLSRK MPFLVPKVPQ QRDGEECGFF  360
VLYYIKLFVE SAPESFSISD GYPYFERMAN EIQKWTTKEE EALYDAVAKH GSGKWKIVLS  420
DPQFASSLVN RSNTDLKNKW RTLSKKFDVP KSSLKWTNEE EEALRAGVEK HGVGKWVDIL  480
SDSQFASSLD SRSNMNLKDK WRTLSKKFDV PKSSLKWTNE EEEALRAGVE KHGVGKWVDI  540
LSDSQFASSL DSRSNMNLKD KWRTLSKKFD VPESSLKWTT EEEEALRAGV EKHGVGKWMD  600
ILSDSQFASS LYSRSNIMLK DKWRSLTKSS DVSNNRKKVR THRIHDQMHP RPHPTRKSKR  660
KRKKRVVEEV SDSQDHSVEK VRGSSTNKRS KKRVVEEVSD SHDYSAEEVS DSHDYAAEEV  720
SDSHDYSVEA VSDSHDYSVE KVRDTLTKKR SKKRVVEEVS DSHDYSVEEV SDSRDCSVEE  780
VRDSHDYSVE EVSDSHNYSV EEVSNSHDYP VDNASEIYPF EEVRDSQVYH HQCTSTRQRR  840
GTRSNMVNHA RKLNSEKVHS YLEKLWLSFS EDKKSSLAHL DPIWYNMYST GSNKEKVLKW  900
IKKKDIFSRK YVGHWSVLIF CHFGESLESK VNTPCILLLD SLEKTDHSTQ FEPLIRKFVL  960
DIYGKLKRTE DKRLLRKMPF LVPKVPQQRD GEECGYFVLY YIKLFVESAP ESFSISDGYP  1020
YFMTKDWFSS EEVDSFCKTL NSSDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	656	664	RKSKRKRKK
2	659	665	KRKRKKR
3	660	664	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	3e-19	MYB_related family protein