PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc027814.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24886.9 Da PI: 6.7252 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00035 | 170 | 206 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ ++Lre++P k ++ +++ +Av+Y+ksL Cse_sc027814.1_g020.1 170 REKMRKMVNTLREIVPGG-----KQMNSVAVIDEAVKYLKSL 206 7999999*********87.....67***************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MQSDHQHLHS NTKLPLADQV GRGYIPNPHI ESFFSQNVDF QPSKICPRNF IIFDRTDNRS 60 QIMYHPAVSP GIGHPGTSYI ENNMLVRNNV NAPRELNSVT KEDSADIDLL LSFEEEDSEE 120 EYEEDELSTA RTHRNDLKDT ADSCSSRLVK SRLALSSFSH KSSGSSERKR EKMRKMVNTL 180 REIVPGGKQM NSVAVIDEAV KYLKSLKVEL QKVGVANLKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.1 | 5e-26 | bHLH family protein |