PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT1G29950.1 | ||||||||
Common Name | BHLH144, EN130, F1N18.24, T1P2.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27822.1 Da PI: 4.4358 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00041 | 199 | 235 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a +L +Av+Y+ksL AT1G29950.1 199 RKKMKKMMGVLRRIVPGG-----EQMNTACVLDEAVQYLKSL 235 899*************95.....68***************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.81 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-7 | 199 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-6 | 199 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MQNNQFPHFS DEVGDRNMHN PYASGSSYDA LFPPCAKLPY HGVELQPSAV CPKNFVIFDQ 60 TYDRSQVMYH PELTHKLMNT PSLNNLASTF QNEYVGGSYG NYGNYEQEVS SSYQEDPNEI 120 DALLSADEDY EENDDNEGEE DGGDSEEVST ARTSSRDYGN TTAESCCSSY GYNNNNNNNS 180 RKQSLSGSAS SSNNDGKGRK KMKKMMGVLR RIVPGGEQMN TACVLDEAVQ YLKSLKIEAQ 240 KLGVGHFSNQ S |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 197 | 205 | GRKKMKKMM |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.43371 | 0.0 | bud| flower| silique |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 260027_at | 0.0 | ||||
Expression Atlas | AT1G29950 | - | ||||
AtGenExpress | AT1G29950 | - | ||||
ATTED-II | AT1G29950 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT1G29950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT1G29950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC008030 | 0.0 | AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence. | |||
GenBank | AC022455 | 0.0 | AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence. | |||
GenBank | AF361607 | 0.0 | AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds. | |||
GenBank | AK230374 | 0.0 | AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05. | |||
GenBank | AK318702 | 0.0 | AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13. | |||
GenBank | AY074843 | 0.0 | AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_564342.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_973937.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9ASX9 | 0.0 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | C0Z288 | 0.0 | C0Z288_ARATH; AT1G29950 protein | ||||
STRING | AT1G29950.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6195 | 16 | 26 | Representative plant | OGRP5968 | 5 | 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT1G29950.1 |
Entrez Gene | 839873 |
iHOP | AT1G29950 |
wikigenes | AT1G29950 |