PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc027511.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 402aa MW: 44831.6 Da PI: 8.2751

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc027511.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.7e-17	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ G ++W+ I + ++ gR++k+c++rw + Cse_sc027511.1_g030.1 15 KGSWTPEEDAKLIQLVETQGARNWSVIGSSIP-GRSGKSCRLRWCNQ 60 799***************************.*********985 PP
2	Myb_DNA-binding	50	7e-16	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+++++a+ +G++ W+ I++ ++ gRt++ +k++w++ Cse_sc027511.1_g030.1 69 PFTPHEDDIILRAHVIHGNK-WSVISKLLP-GRTDNAIKNHWNST 111 89****************.*****.*********986 PP
3	Myb_DNA-binding	47.3	4.6e-15	251	293	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a+ +G++ W+ I++ ++ gRt++ +k++w++ Cse_sc027511.1_g030.1 251 PFTPHEDDVILRAHLIHGNK-WSVISKLLP-GRTDNAIKNHWNSI 293 89****************.*****.*********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MTSSSNDDVN LLKKKGSWTP EEDAKLIQLV ETQGARNWSV IGSSIPGRSG KSCRLRWCNQ 60 LSPNVQHRPF TPHEDDIILR AHVIHGNKWS VISKLLPGRT DNAIKNHWNS TLRRRGLTLT 120 RSSESESTQS DDDDGLGKNK RRRCVSVSVS DVSSCDGMTL LTLLPPGDGE KKKGDDDVEK 180 GTVEIEDTCL VDVMKKMIAK EVRSYIDELR AKEGLSFGPV LSQESDIPGR SGKSCRLRWC 240 NKLSPNVQHR PFTPHEDDVI LRAHLIHGNK WSVISKLLPG RTDNAIKNHW NSILRRRGLT 300 LTRSSESEST QSDDDDGLGK NKRRRCVSVS DVSSCHGMTV LTLLPPSDGE KKKGDDEVEK 360 GTVEIEDTCL VDVMKKMIAK EVRTYIDELR AKDGLSFGPT TE

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MTSSSNDDVN LLKKKGSWTP EEDAKLIQLV ETQGARNWSV IGSSIPGRSG KSCRLRWCNQ  60
LSPNVQHRPF TPHEDDIILR AHVIHGNKWS VISKLLPGRT DNAIKNHWNS TLRRRGLTLT  120
RSSESESTQS DDDDGLGKNK RRRCVSVSVS DVSSCDGMTL LTLLPPGDGE KKKGDDDVEK  180
GTVEIEDTCL VDVMKKMIAK EVRSYIDELR AKEGLSFGPV LSQESDIPGR SGKSCRLRWC  240
NKLSPNVQHR PFTPHEDDVI LRAHLIHGNK WSVISKLLPG RTDNAIKNHW NSILRRRGLT  300
LTRSSESEST QSDDDDGLGK NKRRRCVSVS DVSSCHGMTV LTLLPPSDGE KKKGDDEVEK  360
GTVEIEDTCL VDVMKKMIAK EVRTYIDELR AKDGLSFGPT TE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-43	MYB family protein