PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc024686.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31617.8 Da    PI: 4.4834
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc024686.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-193790356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           k+++++++q++ Le+ Fe +++++ +++ + A++lgL+ rqV +WFqNrRa++k
  Cse_sc024686.1_g020.1 37 KKRRLSNHQVKSLEKIFEVDNKLDPDRKVKVAHELGLQPRQVAIWFQNRRARWK 90
                           45689************************************************9 PP
2HD-ZIP_I/II122.91.6e-3937127292
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kkrrls++qvk+LE+ Fe ++kL+p+rKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk++yd lk + ++Le e+e++ +
  Cse_sc024686.1_g020.1  37 KKRRLSNHQVKSLEKIFEVDNKLDPDRKVKVAHELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKSSYDGLKINYQKLELEKETILK 124
                            9**********************************************************************************99988 PP

            HD-ZIP_I/II  90 elk 92 
                            el 
  Cse_sc024686.1_g020.1 125 ELV 127
                            876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MKSEEEYGGE FQPMVDGGAT ADVEDYGGEE TGQFGDKKRR LSNHQVKSLE KIFEVDNKLD  60
PDRKVKVAHE LGLQPRQVAI WFQNRRARWK TKQLERDYNV LKSSYDGLKI NYQKLELEKE  120
TILKELVELK AKLHEDTTER NDEIEDRENN TLFLGSDPTN TNNEVYTSLN YDKTQKQLDL  180
KDGFSDSDSS GVLNEENMNV SNANESPLLH MTSFGLSSLC SSSVTISNHT DMIDPGTYQQ  240
QQDPYLVSNV EEESCNIFLV DHAPNLCWYF RDHMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13766KKRRLSNHQVKSLEKIFEVDNKLDPDRKVK
28593RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-38HD-ZIP family protein