PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc023909.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 281aa    MW: 32064 Da    PI: 5.359
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc023909.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.91.8e-24682463185
                   GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            +lL++ Aea   g+++laq + + +   asp g +++Rl   +        +r +se  + +  +++    s++  +a+++f+ v+P+
  Cse_sc023909.1_g040.1  68 NLLMAHAEATGLGQNKLAQVIQKCVCPKASPIGPAIERLGLNL--------FR-CSENQEDMYIKQK----SINFKMAFRTFYAVFPY 142
                            6677777777777777777777777777777777777765433........33.2222233334444....689999*********** PP

                   GRAS  91 lkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.............skeeleetger 164
                             +f+h++aN+aI ea+ ++ e vHi+D+d+  G QWp+ ++a+a+    + sl iT ++ ++ +             s  + e+t+++
  Cse_sc023909.1_g040.1 143 GRFAHFIANSAIIEAIPTHvESVHILDLDLYVGCQWPPVIEAIAQM---KKSLTITNIKLKQDQpslkrfqpmmsmaSDSQFEQTKRQ 227
                            ******************99************************95...56799***999888789999*****99999********* PP

                   GRAS 165 LakfAeelgvpfefnvlvakr 185
                            L +fA++ g++++ + +  + 
  Cse_sc023909.1_g040.1 228 LCEFARSYGLNLNVQEM--DM 246
                            ***********998875..22 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MEDFEDVCKW LCDDDQQMED IPAESYVWGP SMLMNSCHPC AFLPYETQSS MVHIDDTMEI  60
ESQTRLQNLL MAHAEATGLG QNKLAQVIQK CVCPKASPIG PAIERLGLNL FRCSENQEDM  120
YIKQKSINFK MAFRTFYAVF PYGRFAHFIA NSAIIEAIPT HVESVHILDL DLYVGCQWPP  180
VIEAIAQMKK SLTITNIKLK QDQPSLKRFQ PMMSMASDSQ FEQTKRQLCE FARSYGLNLN  240
VQEMDMAQIV NIMEGGKLGR EFMAFNFMVN PSTYAKGIKH N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-13GRAS family protein