PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc023507.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HB-PHD

Protein Properties

Length: 738aa MW: 82476.2 Da PI: 6.2341

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc023507.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33	1e-10	511	554	10	53
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e L +F+ n+ ps++ +eeL+k+lgL+ ++V WF+N R+ Cse_sc023507.1_g020.1 511 DAVEKLRIVFATNQLPSRALKEELSKQLGLDPEKVNKWFKNARY 554 67889999**********************************97 PP
2	PHD	29.3	1.9e-10	213	266	2	50
BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 C+ C+ + +++++lCd +C+ +fH+ C++++l +e++p g w+C+ C + Cse_sc023507.1_g020.1 213 CAKCKLreAFPDNDIILCDgTCNCAFHQMCIDPPLLTENIPPGdqGWFCKYCVC 266 88898844455******56****************9999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MSGEGAEEAH KNIGELLHSK SLTKRSIKRK SHGNTQSTPV SKKKVVDYLT NSKRNDFKHI 60 NASRKPAKSM SMTSLEGDQN QAATGSVENA NLEKENFTSE NIKRRRKRKQ KRANNKVEID 120 EAAKLKRRTR YLLIKMRIEQ NLIDAYSTEG WKGQSREKIK PERELQRAKK QILQCKLGIR 180 DALHQLDLLS SDGSIDESVI GPDGTVHHDH IHCAKCKLRE AFPDNDIILC DGTCNCAFHQ 240 MCIDPPLLTE NIPPGDQGWF CKYCVCKTEI IDAMNAHLGT SYTNDSNWQE IFKVEATLPD 300 AGDTILNQED WPSDESGDDD YDPERVEKRE NSCSNGQVCS DGESSNDDAT SNYSLQSLED 360 EDLDDESLKL SITMGLESTS TDVLGQGSGS GSDGDFMSGR RQRQSVDYRK LYDEMFGKDA 420 LANEQVSEDE DWGPTNRKRR EKESDAASTL MTLCETEKSV KDTLCETEKS VKGVADTSTE 480 KIVKDVADTS TADTNLSCKG TKRSFFRIPA DAVEKLRIVF ATNQLPSRAL KEELSKQLGL 540 DPEKVNKWFK NARYLSLKTQ KLAEDIPTQM DDPSISKECG SEPTKNESID KTIPVNLPIN 600 VGHTPNDRRP KKFRRRKNAS SATSTAMQQD DGDLHLSTLA NKVDGGVDVV EDDASLKMLE 660 DNANKEKNKA VVVDGNQQTA TAAEAHMEKL CFLKTKLEKL QQVLLLRTPN RKAKTTASSS 720 IDHNDIIFFP VAHLKEKS

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MSGEGAEEAH KNIGELLHSK SLTKRSIKRK SHGNTQSTPV SKKKVVDYLT NSKRNDFKHI  60
NASRKPAKSM SMTSLEGDQN QAATGSVENA NLEKENFTSE NIKRRRKRKQ KRANNKVEID  120
EAAKLKRRTR YLLIKMRIEQ NLIDAYSTEG WKGQSREKIK PERELQRAKK QILQCKLGIR  180
DALHQLDLLS SDGSIDESVI GPDGTVHHDH IHCAKCKLRE AFPDNDIILC DGTCNCAFHQ  240
MCIDPPLLTE NIPPGDQGWF CKYCVCKTEI IDAMNAHLGT SYTNDSNWQE IFKVEATLPD  300
AGDTILNQED WPSDESGDDD YDPERVEKRE NSCSNGQVCS DGESSNDDAT SNYSLQSLED  360
EDLDDESLKL SITMGLESTS TDVLGQGSGS GSDGDFMSGR RQRQSVDYRK LYDEMFGKDA  420
LANEQVSEDE DWGPTNRKRR EKESDAASTL MTLCETEKSV KDTLCETEKS VKGVADTSTE  480
KIVKDVADTS TADTNLSCKG TKRSFFRIPA DAVEKLRIVF ATNQLPSRAL KEELSKQLGL  540
DPEKVNKWFK NARYLSLKTQ KLAEDIPTQM DDPSISKECG SEPTKNESID KTIPVNLPIN  600
VGHTPNDRRP KKFRRRKNAS SATSTAMQQD DGDLHLSTLA NKVDGGVDVV EDDASLKMLE  660
DNANKEKNKA VVVDGNQQTA TAAEAHMEKL CFLKTKLEKL QQVLLLRTPN RKAKTTASSS  720
IDHNDIIFFP VAHLKEKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	32	KRKSH
2	103	109	KRRRKRK
3	103	110	KRRRKRKQ
4	104	112	RRRKRKQKR
5	437	442	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-153	HB-PHD family protein