PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc022146.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29665.7 Da    PI: 9.3112
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc022146.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-18119173256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ ++tk q   Le++F+ +++++ ++++eLA++l+L  rqV vWFqNrRa+ k
  Cse_sc022146.1_g020.1 119 RKKLRLTKAQSALLEQAFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 173
                            678899***********************************************98 PP
2HD-ZIP_I/II123.11.3e-39119208191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+k q++lLE+ F+++++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++d+lkeen+rL+ke +eL+
  Cse_sc022146.1_g020.1 119 RKKLRLTKAQSALLEQAFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCDTLKEENTRLHKELQELK 206
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eel 91 
                             +l
  Cse_sc022146.1_g020.1 207 -AL 208
                            .55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGFDSVCNKG LVLELGLNSS TVEKNTANTT KKPCNNLSFD PTLTLTLSSD HDHGVNKRKH  60
GDHHGGVLYR QDSVSGGGSS FSVASATVKR EREVKSEESE RVISATSVEE DDDGVINGRK  120
KLRLTKAQSA LLEQAFKHHS TLNPKQKQEL ARELKLRPRQ VEVWFQNRRA RTKLKQTEVD  180
CEYLKKCCDT LKEENTRLHK ELQELKALKM SPTKPLYMQL PAATLTMCPS CERIGDTTST  240
TKTRPFTMDT KPHFFNPFTN PSAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-79HD-ZIP family protein