PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc020053.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 303aa MW: 33514.9 Da PI: 6.593 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.2 | 6.8e-44 | 7 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l++++reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+ Cse_sc020053.1_g010.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELSTTQREDAVNSLAYEADARLRDPVYGCVGLISILQHRLK 94 7*************************************************************************************** PP DUF260 89 qlkaelallk 98 q++++l+ +k Cse_sc020053.1_g010.1 95 QVQSDLHNAK 104 *****99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELSTTQR 60 EDAVNSLAYE ADARLRDPVY GCVGLISILQ HRLKQVQSDL HNAKLELAAY IGPSAMLPIL 120 NQGFVPQIAN MPSSSVPVMP YNMQPMLGMM PSQHQAQILE AQQQQQQQQR KQLVAVANAR 180 DQQEMMRNYE QLQQPLQQQH PDELARFSGA FDAAAGSGQV VNGNSFSPVT APAVVMSPSL 240 GLGGSFVNNS MYQIQHQPQQ EQNHHLDIND LQQHQLLLQQ ETQQPLPAQR VASEEERGAA 300 STC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-75 | LBD family protein |