PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019604.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 408aa MW: 46677.8 Da PI: 9.8854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019604.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.2e-05	19	69	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + E++RR +++ +L +l+P+++++p k + +A+ YIk+Lq Cse_sc019604.1_g010.1 19 RKTLEKNRRIHMKGLCYKLNSLVPSLMSQPFKLTTQENQFDHATVYIKQLQ 69 5789*******************988888889**************9 PP
2	HLH	16.7	1.3e-05	208	258	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + E++RR +++ +L +l+P+++++p k + +A+ YIk+Lq Cse_sc019604.1_g010.1 208 RKTLEKNRRIHMKGLCYKLNSLVPSLMSQPFKFTTQENQFDHATVYIKQLQ 258 5789*******************98888888***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MDVDRMMQTC EGSSKKPERK TLEKNRRIHM KGLCYKLNSL VPSLMSQPFK LTTQENQFDH 60 ATVYIKQLQK RIELLNEKRD QAQRLVNDMR KNDASCSIEN KQKAVSSWLP TVEVKEFEGA 120 LQVFLTSNLE RKFSLPQVVR IVEDGGGEVV KGGYTIVGDK LIYTIHAKAR VTRIGVDVTS 180 VHKELQELIN GSIMMQTCDQ GSSKKPERKT LEKNRRIHMK GLCYKLNSLV PSLMSQPFKF 240 TTQENQFDHA TVYIKQLQNR IELLKEKRDQ ALRLVNDRRK NDASCSIEHK QKAVSSWLPT 300 VEVKEFEGTL QVFLTSNIER KFSLPQVFRI VEDGGGEVVK GGYTIVGDKV IYTIHAKARV 360 TRIGVDVTSV HKELQERELP ELVWIGHDKR TQGTTRLCVL LDESFATS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MDVDRMMQTC EGSSKKPERK TLEKNRRIHM KGLCYKLNSL VPSLMSQPFK LTTQENQFDH  60
ATVYIKQLQK RIELLNEKRD QAQRLVNDMR KNDASCSIEN KQKAVSSWLP TVEVKEFEGA  120
LQVFLTSNLE RKFSLPQVVR IVEDGGGEVV KGGYTIVGDK LIYTIHAKAR VTRIGVDVTS  180
VHKELQELIN GSIMMQTCDQ GSSKKPERKT LEKNRRIHMK GLCYKLNSLV PSLMSQPFKF  240
TTQENQFDHA TVYIKQLQNR IELLKEKRDQ ALRLVNDRRK NDASCSIEHK QKAVSSWLPT  300
VEVKEFEGTL QVFLTSNIER KFSLPQVFRI VEDGGGEVVK GGYTIVGDKV IYTIHAKARV  360
TRIGVDVTSV HKELQERELP ELVWIGHDKR TQGTTRLCVL LDESFATS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-16	bHLH family protein