PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc018186.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family B3
Protein Properties Length: 307aa    MW: 35056.9 Da    PI: 6.7627
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc018186.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-1632123190
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            ff  +++  +lks++l++p +f+++ g++++  kt+tl++++g  +++ v++  +y  + +ry+l+kGW +F+++ ++ +gD +vFk+
  Cse_sc018186.1_g030.1  32 FFVMTITQFNLKSCLLRFPVDFVRSVGIDTK--KTITLKSLDGyeKEMPVRVgtKYHYQAKRYFLSKGWTDFARSTNISVGDKCVFKF 117
                            66777888899***************99954..58888888888888888886577889999*************************9 PP

                            -SSSEE CS
                     B3  85 dgrsef 90 
                            + ++++
  Cse_sc018186.1_g030.1 118 ITSEDK 123
                            976554 PP
2B338.71.8e-12174259893
                            -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                     B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                              +  +++l+lp +f++   +++ee++ ++  d + r + ++ + +++s +y l+ GW  F ++n + egD +vFk+  ++++ ++
  Cse_sc018186.1_g030.1 174 ITTIHKSMLRLPSDFVTLSRIDTEENIIIKTLDGNERLMALRSCQQNNSTHYCLSMGWPAFMRSNSISEGDECVFKYLTSEKKMCL 259
                            55667789********88888888865555555555555555555999999*************************9875555444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MRVDADDVED DDGIADEDED ETAELVEEDD PFFVMTITQF NLKSCLLRFP VDFVRSVGID  60
TKKTITLKSL DGYEKEMPVR VGTKYHYQAK RYFLSKGWTD FARSTNISVG DKCVFKFITS  120
EDKLCLAKIT KARPTQVDDD DVEVDNGMDD KDTYKDVELV DGVDDGDPFF AMTITTIHKS  180
MLRLPSDFVT LSRIDTEENI IIKTLDGNER LMALRSCQQN NSTHYCLSMG WPAFMRSNSI  240
SEGDECVFKY LTSEKKMCLA KVTKTKTQNR LSSPAKVVKR KKRGRPAKVV KRKRGRAASQ  300
KYDGRKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279294KRKKRGRPAKVVKRKR
2280295KRKKRGRPAKVVKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-07B3 family protein