PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016496.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

TCP

Protein Properties

Length: 401aa MW: 42816.9 Da PI: 7.0202

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016496.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.5	4e-41	20	114	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ +++ Cse_sc016496.1_g010.1 20 PPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSSLTAP 107 5679*****************************************************************9997777777777733333 PP TCP 89 kaaksaakskksqk 102 +++++ ++ Cse_sc016496.1_g010.1 108 SSKTA-------PH 114 22222.......22 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
TRSEEPIKEN NQQVATVAPP PPKRSTKDRH TKVDGRGRRI RMPATCAARV FQLTRELGHK 60 SDGETIEWLL QQAEPAIIAA TGTGTIPANF STLNVSLRSS GSSLTAPSSK TAPHHFHGAL 120 ALAPHHHPFE EGFSQMMGFH QGHGQGQVHG QGQHIMTADQ IAEAISSGGG NNGGNGDGSE 180 NYMRKRYRED LFKDEGGQNN EVAVGSPSPS PSNKEGNTGA GAGNSMLRHH GGMMPATAMW 240 AVAQAPTNAA GNTLWMLPVS TSVSTGGGAG HEAQPHHQQQ MWPFQTAGTA TPGSGNTLQA 300 PLHFLPRMAN VEFQQNSRAN SLQLGSMLMQ QQQQPSQHLG LGMSESNIGM LAALNAYSRG 360 GLNMNSDQNH SLDHHQHHSQ QQQQHHSQAS DSGDEDQNDS T

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

TRSEEPIKEN NQQVATVAPP PPKRSTKDRH TKVDGRGRRI RMPATCAARV FQLTRELGHK  60
SDGETIEWLL QQAEPAIIAA TGTGTIPANF STLNVSLRSS GSSLTAPSSK TAPHHFHGAL  120
ALAPHHHPFE EGFSQMMGFH QGHGQGQVHG QGQHIMTADQ IAEAISSGGG NNGGNGDGSE  180
NYMRKRYRED LFKDEGGQNN EVAVGSPSPS PSNKEGNTGA GAGNSMLRHH GGMMPATAMW  240
AVAQAPTNAA GNTLWMLPVS TSVSTGGGAG HEAQPHHQQQ MWPFQTAGTA TPGSGNTLQA  300
PLHFLPRMAN VEFQQNSRAN SLQLGSMLMQ QQQQPSQHLG LGMSESNIGM LAALNAYSRG  360
GLNMNSDQNH SLDHHQHHSQ QQQQHHSQAS DSGDEDQNDS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-51	TCP family protein