PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc014932.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 25112.7 Da PI: 5.968 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.4 | 9e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gkl e+ss Cse_sc014932.1_g010.1 10 RIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLCEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 78.5 | 1.7e-26 | 79 | 172 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +++s+e+a++++l++e a + k+ie L+ +R+llGe+L+ +++eLq++eqqLe+s++ iR++K++++ eqi+elq kek+l ++n Cse_sc014932.1_g010.1 79 DNSSSVEDAEWQHLKNETASMTKKIEALELAKRKLLGEGLGASTIEELQEIEQQLERSVSIIRARKMQVYNEQIQELQAKEKMLASQN 166 445559********************************************************************************** PP K-box 92 kaLrkk 97 +L+ k Cse_sc014932.1_g010.1 167 AMLNVK 172 **9866 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence |
MVRGKTQMRR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLCEFSSS 60 SMEETIERYR NHVKEVQTDN SSSVEDAEWQ HLKNETASMT KKIEALELAK RKLLGEGLGA 120 STIEELQEIE QQLERSVSII RARKMQVYNE QIQELQAKEK MLASQNAMLN VKCIIPTEEN 180 TVEGRENLQI VEYEENSYVE TELFIGLPEK RMKQDKPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-68 | MIKC_MADS family protein |