PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc013616.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31952.8 Da    PI: 4.4408
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc013616.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-2065118356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++++eq++ Le+ Fe+++++  e+++eLAkklgL+ rqV vWFqNrRa++k
  Cse_sc013616.1_g020.1  65 KKRRLSPEQVHMLERSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 118
                            56689************************************************9 PP
2HD-ZIP_I/II1345.5e-4364155192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrls eqv++LE+sFeee+kLeperK+ela++LglqprqvavWFqnrRAR+ktk lE+dy++Lk++yd l+++ +++ ke+e+L+
  Cse_sc013616.1_g020.1  64 EKKRRLSPEQVHMLERSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKTLERDYDRLKSSYDILTSDFDSIVKENEKLK 151
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            +e+ 
  Cse_sc013616.1_g020.1 152 AEVI 155
                            9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MESGHLFFGC NNSNTNMMFL GNGDNHFRGT RLGFNMEESS KKRPFFSSLD DMLEEEYYDE  60
QLTEKKRRLS PEQVHMLERS FEEENKLEPE RKTELAKKLG LQPRQVAVWF QNRRARWKTK  120
TLERDYDRLK SSYDILTSDF DSIVKENEKL KAEVISLTEK LQPKEVHENS GTGQDSAADA  180
NEGGDVLAPQ EKVKLEDRFS TGSGGSAVVD DLDGPQLVDS GDSYFPDDDY PHEYVAPVDQ  240
SEEDDGSDDG HNHFPYMFAT ADHHHHEESD SLGWWVWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-86HD-ZIP family protein