PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc012407.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 20604.5 Da PI: 6.4933 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.4 | 2.1e-37 | 8 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.paeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aC++lrrkC+k+Cv+apyf p+++ +++f++vh++FGa+n +ll ++p ++r da+ s++yeA r+rdPvyG+v+++++lqqq Cse_sc012407.1_g040.1 8 PCGACRFLRRKCVKGCVFAPYFePDDRgTADFEAVHRVFGAKNAARLLLRTPANKRLDAVVSMCYEALSRVRDPVYGCVAHVFTLQQQ 95 7*********************7777778*********************************************************** PP DUF260 87 leqlkaelallkee 100 +++l+aela+++++ Cse_sc012407.1_g040.1 96 VDNLQAELAYVQAR 109 **********9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence |
MSDNGGSPCG ACRFLRRKCV KGCVFAPYFE PDDRGTADFE AVHRVFGAKN AARLLLRTPA 60 NKRLDAVVSM CYEALSRVRD PVYGCVAHVF TLQQQVDNLQ AELAYVQARL SILKHGSCQL 120 PMDLQPRSSI SFSGSSLTSL HFGQTPVDSS CLSSNDNTSL GEELFEEDDL EILARELVTK 180 YLPVPKI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-53 | LBD family protein |